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KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125344999
Entry
125344999         CDS       T08928                                 
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04151  PI3K-Akt signaling pathway
plop04510  Focal adhesion
plop04512  ECM-receptor interaction
plop04820  Cytoskeleton in muscle cells
plop04974  Protein digestion and absorption
plop05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:plop00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    125344999
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125344999
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125344999
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    125344999
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    125344999
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:plop04147]
    125344999
   00536 Glycosaminoglycan binding proteins [BR:plop00536]
    125344999
Exosome [BR:plop04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   125344999
Glycosaminoglycan binding proteins [BR:plop00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125344999
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   125344999
SSDB
Motif
Pfam: VWA Collagen VWA_2 YcaO
Other DBs
NCBI-GeneID: 125344999
NCBI-ProteinID: XP_048193213
Position
Unknown
AA seq 1027 aa
MRLGLTLLSLLLQACWGAAQDDPGAPKAIAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKAFTKRFIDNLRDRYYRCDRSLVWNAGALHYSDEVEVIRGLMRMPSGRDELKASVDAI
KYFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGVKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRGAEETITQTIDTIVEMIK
NNVEQVCCSFECQPARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGETGYPGLPGCKGSPGFDGVQGPPGP
KGDAGSFGLKGEKGEAGADGEAGRPGNSGPPGDEGEPGEPGPPGEKGEAGDEGSAGPDGA
PGERGGPGERGPRGTPGVRGPRGDPGESGPQGDQGREGPVGIPGDQGEAGPIGPKGYRGD
EGPPGPEGLRGAPGPVGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGSRGPPGLNGTK
GYPGLKGDEGEAGEPGEDNNDISPRGVKGAKGYRGPEGPQGPPGHVGPPGPDECEILDII
MKMCSCCECKCGPIDILFVLDSSESIGLQNFEIAKDFIIKVIDRLSRVELVKFEPGQSHA
GVVQYSHNQMQEHVDMRSPHVRNAQEFKEAVKKLQWMAGGTYTGEALQYTRDRLLPPTQN
NRIALVITDGRSDTQRDTTPLNVLCGPDIQVVSVGIKDVFGFVASSDQLNVISCQGVLSQ
GRPGLSLVKENYAELLDDAFLKNVTAQICIDKKCPDYTCPITFSSPADITILLDGSASVG
SHNFETTKHFAKRVAERFLSAGRESPGHQARVAVVQYSGRGQQQPGRAALQFLQNYTVLA
GTVDGMDYFNDATDVTDALGYVTRFYREASAGAAKKRLLLFSDGNSQGATAADIEKAVQE
AQRAGVEIFVVVVGPHVNEPHVRVLVTGKTAEYDVSFGERHLFRVPSYGALLRGVYYQTV
SRKVAQG
NT seq 3084 nt   +upstreamnt  +downstreamnt
atgaggctgggcctcacgctgctgtccctgctgctgcaagcctgctggggagctgcccag
gacgatccaggggccccaaaggccattgccttccaggactgccctgtggacctgttcttt
gtgctggacacttctgagagcgtggccctgaggctcaagccctacggtgccctggtggac
aaggtcaaggccttcaccaagcgcttcatcgacaacctgagagacaggtactaccggtgt
gaccgcagcctggtgtggaatgcaggggcgctgcactacagcgacgaggtggaggtcatc
cgcgggctcatgcgcatgcccagcggccgggacgagctcaaggccagcgtagatgccatc
aagtactttggcaagggcacctacaccgactgcgccatcaagaaggggctggaggagctg
ctcattgggggctcccacctgaaggagaacaagtacctgattgtggtgacggacgggcac
ccgctggagggctacaaggagccctgcgggggcctggaggacgcagtgaatgaagccaag
cacctgggtgtcaaagtcttctccgtggccatcacccctgaccacctggagccacgccta
agcatcattgccacggaccacacttaccggcgcaacttcaccgcggcagactgggggcag
agccgcggggcagaggagaccatcactcagaccatcgacaccatcgtggaaatgatcaaa
aacaacgtggagcaagtgtgctgctccttcgagtgccagcctgccagaggacctccaggg
ccccggggggaccccgggtatgagggagagcgaggaaagccaggtctccccggagagaaa
ggagaagctggagaccctggaaggcctggagacctgggacccgtggggtaccaggggatg
aagggagaaaagggaagccgaggggagaagggctccaggggacccaaaggctacaagggc
gagaagggcaagcgtggcatcgatggggtagacggcatgaagggggagacggggtaccca
ggcctgcctggctgcaagggctcaccggggtttgacggcgttcaaggacctcccggccca
aagggagatgctggttccttcggactgaagggagaaaagggtgaagctggagcagacggg
gaggccgggagaccggggaactcaggaccacccggagacgagggtgagccgggagagcct
gggccccccggagagaaaggagaggccggtgacgaggggagcgcaggccctgacggtgcc
ccgggagagaggggtggccctggagaaagaggacctcgggggaccccgggcgtgcggggg
ccgagaggagacccaggagaatctggaccccaaggtgaccagggaagagaagggcctgtt
ggcattccaggagaccagggcgaggctggccccattggacctaaaggataccgcggtgac
gagggtcccccggggcctgagggtctcagaggcgctccaggacctgtcgggcccccagga
gacccggggctgatgggtgaacggggtgaagatggcccccctggaaatggcaccgagggc
ttccctggctttccgggatatccaggcagcaggggcccccctgggctgaacggaacaaaa
ggctaccctggcctcaagggggatgaaggagaagctggagagcccggagaggataacaac
gacatttcccctcgtggggtcaaaggagcaaaagggtaccgaggcccagaaggcccacag
ggacccccaggacacgtgggaccacctggaccagacgaatgtgagattttggacatcatc
atgaaaatgtgctcctgttgtgagtgcaagtgtggccccatcgacatcctcttcgtgctg
gacagctctgagagcattggcctgcagaatttcgagattgccaaggacttcatcattaag
gtcattgaccgtctgagcagagtggagctggtcaagtttgagccgggccagtcccacgcc
ggtgtggttcagtacagccacaaccagatgcaggagcacgtggacatgaggagcccgcac
gtccgcaatgcccaggagttcaaggaagccgtgaagaagctacagtggatggcgggcggc
acgtacacgggggaggcactgcagtacacccgggaccggctgctgccacccacccagaac
aaccgcatcgctctggtcatcacggacgggcgctcggacacccagagagacaccacgccc
ctcaacgtgctgtgcggccccgacatccaggtggtctccgtgggcatcaaagacgtgttt
ggctttgtggccagctctgaccagctcaacgtcatctcctgccaaggcgtcttgtcccaa
ggccggcccggcctctctctggtgaaggagaactatgcagagctgctggacgacgctttc
ctgaagaacgtcaccgcccagatctgcatagacaaaaagtgtccggattacacctgccca
atcaccttctcctccccggccgacatcaccatcctgctggacggctcggccagcgtgggc
agccacaacttcgagaccaccaagcacttcgccaagcgtgtggccgagcgcttcctgtcg
gccggccgggagagccccggccaccaagcgcgcgtggccgtggtgcagtacagcggccgg
ggccagcagcagccggggcgcgcggccctgcagttcctgcagaactacaccgtgctggcc
ggcaccgtggacggcatggactacttcaacgacgccacggacgtcaccgacgccctgggc
tacgtcactcgcttctaccgcgaggcgtccgcgggggccgccaagaagaggctgctgctg
ttctccgacggcaactcgcagggggccacggcggcggacatcgagaaggccgtgcaggag
gctcagcgcgcgggcgtcgagatcttcgtggtggtggtgggcccccacgtgaacgagccc
cacgtccgcgtgctggtcaccggcaagacggccgagtacgacgtgtccttcggcgagcgc
cacctgttccgggtgcccagctacggggccctgctccgtggagtctactaccagacagtc
tccaggaaggtggcgcagggctag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (8)   

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