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KEGG   Peromyscus leucopus (white-footed mouse): 114696519
Entry
114696519         CDS       T07241                                 
Symbol
Col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
pleu  Peromyscus leucopus (white-footed mouse)
Pathway
pleu04151  PI3K-Akt signaling pathway
pleu04510  Focal adhesion
pleu04512  ECM-receptor interaction
pleu04820  Cytoskeleton in muscle cells
pleu04974  Protein digestion and absorption
pleu05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:pleu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    114696519 (Col6a1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    114696519 (Col6a1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    114696519 (Col6a1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    114696519 (Col6a1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    114696519 (Col6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pleu04147]
    114696519 (Col6a1)
   00536 Glycosaminoglycan binding proteins [BR:pleu00536]
    114696519 (Col6a1)
Exosome [BR:pleu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   114696519 (Col6a1)
Glycosaminoglycan binding proteins [BR:pleu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   114696519 (Col6a1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   114696519 (Col6a1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 YcaO
Other DBs
NCBI-GeneID: 114696519
NCBI-ProteinID: XP_028730121
Position
16_21:19052399..19069422
AA seq 1035 aa
MVTCRPARNMRLAHTLLPLLLQACWVAAQDIQDSKAIAFQDCPVDLFFVLDTSESVALRL
KPYGALVDKVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPSGRDE
LKASVDAIKYFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGGL
EDAVNEAKHLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGHSRDAEETISQTI
DTIVDMIKNNVEQVCCTFECQAARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDL
GPVGYQGMKGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGETGFPGLPGCKGSPGFD
GIQGPPGPKGDAGAFGLKGEKGEAGADGEPGRPGSSGPPGDEGDPGEPGPPGEKGEAGDE
GNAGPDGAPGERGGPGERGPRGTPGVRGPRGDPGEAGPQGDQGREGPVGIPGDSGEAGPI
GPKGYRGDEGPPGPEGLRGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGNRG
PPGLNGTKGYPGLKGDEGEVGDPGDDNNDVSPRGAKGAKGYRGPEGPQGPPGHVGPPGPD
ECEILDIIMKMCSCCECTCGPIDILFVLDSSESIGLQNFEIAKDFIIKVIDRLSKDELVK
FEPGQSHAGVVQYSHNQMQEHVDMRSPNIRNAQDFKEAVKKLQWMAGGTFTGEALQYTRD
RLLPPTQNNRIALVITDGRSDTQRDTTPLSVLCGPDIQVVSVGIKDVFGFVAGSDQLNVI
SCQGLLSQGRPGISLVKENYAELLDDGFLKNITAQICIDKKCPDYTCPITFSSPADITIL
LDGSASVGSHNFETTKVFAKRLAERFLSAGRTDPSQDVRVAVVQYSGVGQQQPGRAALQF
LQNYTVLASSVDSMDFINDATDVNDALSYVTRFYREASSGATKKRILLFSDGNSQGATAE
AIEKAVQEAQRAGIEIFVVVVGPQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPNYQALL
RGVFYQTVSRKVALG
NT seq 3108 nt   +upstreamnt  +downstreamnt
atggtgacctgcaggccagccagaaacatgaggctggcccacactctgctgcccctgctg
ctacaggcctgctgggtggccgcacaggacatccaggactccaaagctattgccttccaa
gactgccctgtggatctattcttcgtgctggatacctcggaaagcgtggccttgaggctg
aaaccctacggggccctggtggacaaggtgaaatccttcaccaagcgctttatcgacaac
ctgagagacaggtactaccgctgtgaccgcaacttggtctggaatgcgggtgcgctgcac
tacagtgacgaggtggagatcatccgagggctcacgcgcatgcccagtggccgcgacgag
ctcaaggcgagcgtggatgcgatcaagtacttcggcaaaggcacctacacggactgcgcc
attaagaaggggctggaggagctgctcatagggggctcccacctgaaggagaacaagtac
ctgatcgtggtgacggatgggcaccctctagagggctacaaggaaccgtgtgggggcctg
gaagacgcagtgaatgaagccaaacacctgggcatcaaagtcttctctgtggccatcaca
cctgaccacctagaaccacgcctaagcatcatcgccacagaccacacataccggcgcaat
ttcacagccgctgactggggccatagccgcgatgcagaagagaccatcagccagactatt
gacaccattgtggacatgattaaaaataatgtggagcaagtgtgctgtacctttgagtgc
caggctgcccgaggacctcctgggccccgaggtgaccctggctatgagggggaacgagga
aagcctggccttcccggagagaagggagaagctggagaccccggaagacccggggatctt
ggaccagtcgggtaccagggtatgaagggagaaaaagggagccgtggagagaagggctcc
agaggacccaaaggctacaagggtgagaaaggcaagcgtggcattgacggggtggacggc
atgaagggggaaacggggttcccgggactaccaggctgcaagggctcgccaggattcgat
ggcattcaaggacccccaggtcctaagggggatgctggtgcctttggcctgaaaggagaa
aagggtgaagctggagcagacggtgagcctgggagaccagggagctcagggccacctgga
gatgagggtgatccgggagagcctggtccccccggagagaaaggagaggctggtgacgag
gggaacgctggcccagatggtgcccctggagagaggggtggccctggtgaaagaggacct
cgggggacccctggtgtgaggggcccaaggggagacccgggtgaagctggaccacaaggt
gaccaaggaagagaaggtcctgtcggcatccctggagattcgggtgaggctggccccatt
ggacctaaaggataccgaggtgatgagggtcctccaggccctgagggtctcagaggagct
ccaggacctgctggaccccctggagacccgggactgatgggtgaaaggggtgaagatggt
ccaccaggaaacggcacagaaggtttccccggcttccctggatatccaggcaacagaggg
ccccctggcttaaacggcaccaaaggctaccctggcctcaagggggatgagggtgaagtt
ggagacccgggagacgataacaatgacgtttcaccccgtggggccaaaggggcaaagggg
taccgaggcccagaaggaccccagggacctccaggacatgtgggaccacctgggccagat
gagtgcgagattttggatatcatcatgaaaatgtgctcctgctgtgagtgcacatgcggc
cccattgacatcctcttcgtgctggacagctctgagagcattggcctacagaactttgag
attgccaaggacttcatcatcaaggtcattgaccggctgagcaaggatgagctggtcaag
tttgagccagggcagtcacatgcaggtgtggtacagtacagccacaaccagatgcaagag
cacgtggacatgcgaagccccaacatccgcaacgcccaggacttcaaagaagccgtgaag
aagctgcagtggatggctggcggcacattcacgggagaagcgctgcagtacacccgggac
cggctgcttccacccacccagaacaaccggatcgctctggtcatcaccgatgggcgctct
gacactcaacgggacacaacacccctcagtgtgctctgtggcccagacattcaggtagtt
tccgtgggcatcaaggatgtgtttggctttgtcgcgggctccgaccaactcaacgtcatt
tcctgccaaggcctattgtcacaaggccggccaggtatctccctggtgaaggagaactat
gccgagcttctagacgacggctttctgaagaacatcacggcccagatctgcatagataag
aagtgtccggattatacctgcccaatcacgttctcctccccggctgacatcaccatcctg
ctggatggctcagccagtgtcggcagccacaacttcgaaaccaccaaggtcttcgccaag
cgcctagctgagcgcttcctgtcggcaggcaggacggacccctcccaggatgtgcgggta
gctgtggtacagtacagtggcgtaggccagcaacagccagggcgggcagctcttcagttc
ttgcagaactacaccgtgctggccagctctgtggacagcatggatttcatcaatgacgcc
acagacgtcaatgacgccctgagctatgtaactcgtttctaccgggaagcctcatcgggt
gccaccaagaagagaatcctgctgttttcggatggcaactcacagggggccacagcggag
gccattgagaaggctgtgcaggaggcccagcgtgcaggcattgagatctttgtggtggtg
gtgggcccccaggtgaatgagccccacatccgtgtgctcgtcaccggcaagaccgcggag
tatgacgtggccttcggtgagcgccacctattccgtgtaccaaactaccaggccctgctt
cggggtgtattctaccagacagtctccaggaaggtggcactgggctag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (9)   

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