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KEGG   Pangasianodon hypophthalmus (striped catfish): 113539353
Entry
113539353         CDS       T05759                                 
Name
(RefSeq) retinoic acid receptor RXR-gamma-A-like isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03320  PPAR signaling pathway
phyp04148  Efferocytosis
phyp04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    113539353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:phyp03000]
    113539353
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:phyp03310]
    113539353
Transcription factors [BR:phyp03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    113539353
Nuclear receptors [BR:phyp03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   113539353
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1 tRNA_bind_3
Other DBs
NCBI-GeneID: 113539353
NCBI-ProteinID: XP_026790869
Position
Unknown
AA seq 431 aa
MDHTEYLHLSSSVQVDHSHLRTPSHAPIGSMVTHLHPSVISSIASPFSVITSSSSLSSTA
SSLPSTPNMGFNPQMNTLDASRDVKPPASISSSYQCISPGSLSKHLCSICGDRSSGKHYG
VYSCEGCKGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEE
RQRSRDKNDNEVDSSSGLNEEMPVEKILDAELSVEPKTDTYIQTNADNSTNDPVTNICQA
ADKQLFTLVEWAKRIPHFSQLPLDDQVILLRAGWNELLIASFSHRSVSVKDGIVLGTGLH
VHRNSAHTAGVGSIFDRVLSELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSSPSEVEA
LREKVYASLESYTKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL
MEMLEAPHQIT
NT seq 1296 nt   +upstreamnt  +downstreamnt
atggatcatactgaataccttcatctgagttcttcagtacaggttgaccacagtcacctg
aggacaccttcccatgcacccatcggctccatggtaacacacctccacccatctgtcata
agcagtattgcgtcacccttctctgtcatcacctcttcctcatcactgagctcaaccgcc
tcgtccctgcccagcacacccaacatgggcttcaatcctcagatgaacaccctggatgct
tcaagagacgttaaacctcccgctagcatcagtagcagctaccagtgcatcagtccaggc
tctctgtcgaaacacctgtgctccatctgtggagatcgttcttctggtaaacactatgga
gtatacagctgtgaaggctgcaagggcttcttcaagaggactgtccggaaagacctgaca
tacacatgccgggacagtaaggagtgtttaatagataagcgccagaggaaccgctgtcag
tactgccgctatcagaaatgcctggcaatgggaatgaagagggaagctgtgcaggaagaa
aggcaacggagtcgagataaaaatgacaatgaggtcgattccagcagtggtttaaatgaa
gaaatgccagtggagaagattttagacgctgaattatctgtggagccaaaaacagacaca
tacatccagactaatgcagacaactcaacaaatgatcctgtcaccaacatctgccaggca
gctgataaacagctcttcaccctggtggagtgggcaaaacgcatcccgcacttctctcag
ctacctctggatgaccaggtcatcctcctgcgagcaggctggaacgagctcctcatcgca
tcgttctctcatcgctctgtgtcagtgaaggatggtattgtcttaggcacggggctgcat
gtccaccgcaacagcgctcacactgcaggagtgggatccatcttcgacagggttctttct
gagctggtgtctaaaatgaaggacatgcagatggacaagacggagctcggctgcctcaga
gccatcgttctcttcaacccagatgccaaaggtttgtccagtccatccgaggtagaggca
ctgagagaaaaagtttatgcctcactggagtcatacaccaagcacaaatatccagaccag
ccgggcaggtttgcgaagctcctgctgcgtcttcctgctcttcgctccatcggcctcaag
tgtctcgagcatcttttcttctttaagctcattggcgatacaccgatagatacgttcctc
atggagatgctggaagctccacaccaaatcacatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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