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KEGG   Lynx rufus (bobcat): 124527125
Entry
124527125         CDS       T08475                                 
Name
(RefSeq) collagen alpha-6(VI) chain
  KO
K06238  collagen type VI alpha
Organism
lruf  Lynx rufus (bobcat)
Pathway
lruf04151  PI3K-Akt signaling pathway
lruf04510  Focal adhesion
lruf04512  ECM-receptor interaction
lruf04820  Cytoskeleton in muscle cells
lruf04974  Protein digestion and absorption
lruf05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:lruf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    124527125
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    124527125
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    124527125
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    124527125
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    124527125
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lruf04147]
    124527125
   00536 Glycosaminoglycan binding proteins [BR:lruf00536]
    124527125
Exosome [BR:lruf04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   124527125
Glycosaminoglycan binding proteins [BR:lruf00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   124527125
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   124527125
SSDB
Motif
Pfam: VWA VWA_2 Collagen VWA_3 VWA_CoxE Integrin_beta
Other DBs
NCBI-GeneID: 124527125
NCBI-ProteinID: XP_046956345
Position
Unknown
AA seq 2262 aa
MLLILFLIIVCSHVSMNKDPGPEYADVVFLVDSSDHLGTKSFPLVRTFITKMITSLPIEA
HKYRVALAQYSDRLHSEFQLSTFKSRNPMLNHLKKNFAFIGGSLRIGNALREAHRTFFSG
AAGGRDKKQFPPILVVLASAASEDDDVEEASKALREDGVRIISVGLQEASEEELKAMATA
QFHFNLRSVRDLGTFSQNMTQIIKEATQYRDGAADDILVEVCQGPSVADVVFLLDVSING
SQDNFDYLKEFLEESISALDIKENCMRVGLVAYSNETKVINSLSRGVNKSEVLQNIQNLS
PQAGKAYTGAAIRKIRKEVFSARNGSRKNQGVPQIAVLVTHRPSEDNVTKAAVNLRREGV
TIFTMGIEGASDSQLEKIASHPAEQHVSKLKTFSDLAAHNQTFLKKLRNQITHTVSVFSE
RTETLKSGCVDTEEADIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPQKVRVGAVQY
ADNWDLEFEINKYTNKHDLGKAIENIRQMGGNTNTGAALNFTLGLLQKAKKQRGNRVPCH
LVVLTNGMSKDSILEPANRLREELIRVYAIGVKEANQTQLREIAGEEKRVYYVHDFDALK
DIRNQVVQEICAEEACKEMKADIMFLVDSSGSIGLENFSKMKTFMKNLVSKSQIGADRVQ
IGVVQFSDINKEEFPLNRYMSQREISDAIDRMAHIGETTLTGGALTFMSQYFSPAKGARP
NVRRFLILITDGEAQDIVKEPAVALRQEGIIIYSVGVFGSNVTQLEEISGRPEMVFYVEN
FDILQHIEDDLVFGICSPREECKRIEVLDVVFVIDSSGSIDYDEYNIMKDFMIDLVKKAD
VGKNQVRFGALKYADDPEVLFYLDNLSTKWEVISVLQNDQPMGGNTYTAEALGFSDHMFT
EARGSRLHKGVPQVLIVITDGESHDADKLNATAKALRDKGILVLAVGIAGANPVELLAMA
GSSDKYFFVETFGGLKGIFSDVSASVCNTSKVDCEIEKVDLVFLMDGSNSIHPDDFRKMK
EFLASVVQDFDVSVNRVRIGAAQFSHTYRPEFPLGTFIGKTEISLKIENIQQIFGYTHIG
AALRQVGHYFRPDMGSRINAGTPQVLLVLTDGQSQDEVAQAAEDLRHKGIDIYSVGIGDV
DDQQLIQITGTADKKLTVHNFDELTKVKKRIVRNICTSGGESNCFVDVVVGFDISTHENG
QTLLEGQPWIQTYLQDLLRAISSLNGVSCEVGTETQVSVAFQVTNAMEKYSPKFEIYSEN
ILNSLKDITVKGPSLLNTNLLNSLWDAFQNKSAARGKVVLLFSDGLDDDIEKLEQKSDEL
RKEGLNALITVALDGASDSSDLADLLYTEFGKGFEYRTQLTIGMRDLGSRLSKQLVNVAE
RTCCCLFCKCIGGDGTMGDPGPPGKKGSPGFKGSEGYLGEEGIAGERGASGPVGEQGTKG
CYGAKGPKGNRGLNGQEGEVGESGIGGLNGEQGESGLPGEKGEKGDEGSQGSPGQRGVSG
DRGAKGQRGDPGVPGFDSTIEGPKGLKGERGRQGRRGWPGPPGTPGSRRKTAAHGRRGHT
GPQGKTGIPGPDGLEGSWGLKGPQGPRGETGMKGEKGGLGIKGPQGPPGPGGEAGSPGHL
GSQGNKGEPGDLGERGPIGLPGPRGLPGDDGPPGYGSIGRKGAKGQEGFPGESGPKGETG
DRGGPGETGPKGARGKTISAGLPGEMGSPGEPGPPGRKGVKGARGLASFSTCELIQYVRD
HSPGGHGKPECPVHPTELVFALDQSRDVTRQEFERMKELMSSLVRGVRVRENSCPVGARI
AVLTYSSHARHLIRFSDAYKKSQLLRKIEAIPYERSSDSREIGKAMRFISRNVFKRTLPG
AHTRRIATFFSSGQSTDAQTIAAATMEFGALDIIPVVIAFSNVPSIKRAFAIDDTGTFQV
IMVPSGTDYTPTLERLQRCTFCYDICKPDAFCDQARPPPVQSYVDAAFLLDSSRHVGSAE
FEDIRHFLGALLDHFEITSEPETSVTGDRVALLSHAPPNFLPNTQKSPVRTEFNLTTYNS
KRLMKRHLEESVQQLNGDAFIGHALQWTLDNIFLNTPNMRRNKVIFVISAGETSHLDRET
LKKESLRAKCQGYALFVFSLGPAWNDKELEDLASYPLDHHLVQLGRIHKPDHRYSVKFVR
SFVNSIRRAINKYPPINFKMKCNRFSSTDLKQPPQQLQSFVLGPHKAALRDALQRARFFQ
DKKYLSRVARGSRDDTVQNLIRNTPHTFKNGRKVIKTAPRQQ
NT seq 6789 nt   +upstreamnt  +downstreamnt
atgctgctgatcttgttccttataatagtttgttcccatgtctctatgaacaaagatcct
ggccctgagtatgcagatgttgtgtttctggtggacagctctgatcacctgggaactaag
tccttccctcttgtaagaacgttcatcaccaagatgatcaccagtctccccatcgaggcc
cacaagtaccgcgtggccctggctcagtacagcgaccggctccacagtgagttccagctg
agcaccttcaagagcaggaaccccatgctgaaccacctcaagaagaacttcgccttcatc
ggcggctccctgcggataggaaacgctctccgggaggcccacaggaccttcttctccgga
gcggccggcgggagggacaagaagcagtttcccccgattctggtggtcctggcttctgca
gcgtccgaggacgacgatgtggaagaggcctcgaaggccctgcgggaagacggggtgaga
atcatctccgtggggctgcaggaagcttctgaggaggagctgaaggccatggccacggct
cagtttcacttcaaccttcggtcggtcagggacctgggcacgttttcccaaaacatgacg
cagatcatcaaggaagcgacccagtacagggacggagcggcagatgacattcttgtggaa
gtttgccaaggcccatctgtggctgatgtggtgttcctgttggatgtgtccatcaatggc
agccaggacaactttgactatcttaaggaattcctggaagaaagcatatctgctcttgac
ataaaggaaaactgcatgagggttggccttgtggcctacagcaatgagacaaaggtgata
aattccctcagcaggggtgtaaataagtcggaggttctccagaatatacagaacctctct
ccccaggctgggaaggcctacacaggagctgccatcagaaagatcaggaaggaagtgttc
agtgcacgcaatggcagtcggaagaatcagggggtaccccagattgccgtgctggtgacc
cacagaccgtcagaggataacgtgaccaaggcggccgttaacctccggcgcgagggcgtg
accatcttcaccatgggcatagagggggccagcgacagccagctggagaagatcgcctct
caccccgctgagcagcatgtttccaaactgaaaaccttctctgacctggctgctcacaat
cagacatttctgaagaagctgcggaaccagataacgcacacggtctctgtcttctcagaa
cggactgaaactctcaaatctggttgtgtggacactgaagaagcagacatttatctgctc
attgatggctctggaagcacccaggccaccgacttccatgaaatgaagaccttcctgtca
gaggtcgtagggatgttcaacatcgctccccaaaaagtgcgggttggggccgttcagtat
gctgacaactgggacttggaatttgagatcaataaatacactaacaagcatgacttggga
aaggccattgagaacatccggcagatgggtgggaatacaaacacgggtgcagccctgaat
ttcacgctagggctattgcaaaaagcaaagaagcagcgaggaaacagagtgccgtgtcat
cttgttgtcctgacgaatggcatgtccaaggatagcatcttggagcctgcaaacagactg
agagaagagctcattcgtgtttatgccattggggtcaaggaggccaaccaaacacagctg
cgagaaattgcaggcgaggaaaagagggtatactacgtgcatgacttcgacgctttgaaa
gacataagaaaccaagttgttcaggaaatctgtgctgaagaagcctgcaaagagatgaaa
gcagacatcatgtttctggtggacagttctggcagtataggacttgaaaacttcagcaaa
atgaaaacatttatgaaaaacctggtgagcaaatctcagattggggcagatcgggtgcag
atcggcgtagtccagttcagcgacatcaataaggaggaatttccgctcaatagatacatg
tcccaacgtgaaatttcagatgcaatagaccggatggctcacattggagaaaccaccttg
acgggtggtgccctgacctttatgtctcagtacttcagccctgccaagggggcccggccc
aatgtcaggaggtttctcatcctcatcactgatggtgaagctcaggacatagtcaaggag
ccagcagtagctcttcgacaagaaggcataataatctactcggtgggggtgtttggctcc
aatgtcacccagcttgaggagatcagcgggaggccagagatggtgttttatgttgagaat
tttgatattctgcagcacattgaagatgatcttgtttttggaatatgcagcccccgtgaa
gaatgcaagcgaattgaagttctggatgttgtgtttgtaattgatagctctggaagcatt
gactatgacgaatataatatcatgaaagactttatgattgacttggtgaaaaaagctgac
gttggcaaaaatcaggtccggtttggggctctgaagtatgctgatgacccagaggtactg
ttttatctggataacctcagcacaaaatgggaggtgatttcggtgctccagaatgaccag
cccatggggggcaatacttacaccgctgaggcactaggcttttcagaccacatgttcact
gaagcccggggcagccgcctgcacaaaggggtcccccaagtcctcattgtgatcaccgat
ggggaatcccacgatgcagataagctcaatgccacagccaaggccttgagggacaaaggc
attcttgttctggctgtggggatcgctggtgccaatcctgtagaactgctagctatggca
ggatcaagtgacaagtacttcttcgtggagacttttggaggcctgaaggggatattttca
gatgtgtcagccagtgtatgtaacacttcgaaagtagattgtgaaattgaaaaagtagat
cttgttttcctcatggatggctcaaatagcattcacccagatgacttcaggaagatgaag
gaattcttggcatctgttgttcaagactttgatgtcagtgtcaacagagtacgcatagga
gctgcccagtttagccatacctatcggccggaatttccactaggaactttcataggcaaa
accgagatatcgcttaagattgaaaacatccaacagatctttggatacacacacatcggt
gccgcactccggcaggtggggcattacttccggccagacatgggcagccggataaatgca
ggtaccccacaagtgttgctggtcctcacagatggccagtcccaagatgaggtggctcag
gccgctgaagacctgcgacacaaaggtattgacatttactctgtgggcattggggatgtg
gatgaccaacagctcattcagatcactgggactgcagataaaaaactgacagttcataac
tttgacgaactgacaaaggtcaagaaaaggatagttcgcaacatctgtacctcggggggt
gagagcaattgttttgtggatgttgtggtcggatttgacatctcaactcatgagaatggg
cagactttgctcgaaggtcagccttggatacaaacctaccttcaagacctcttacgtgcc
atcagctccctcaatggggtaagctgtgaggtgggcacagagactcaggttagtgtggca
tttcaagtgaccaatgccatggaaaaatattcccccaagtttgagatctatagtgaaaac
atactgaacagcttgaaggatataacagttaaaggaccatctcttctcaacacaaacctc
ttgaattctctgtgggatgcatttcagaataaatcagctgctcgaggaaaggtggttctc
ttattttcagatggattggatgatgacattgaaaagctggaacaaaaatctgatgaactg
agaaaagaaggcctgaacgccctcataactgttgctctggatggagccagcgactcaagt
gacctggctgatcttctctacactgaattcgggaaagggtttgagtataggacccagctc
actattggaatgagggaccttgggagccgactgtcaaagcaactggtcaatgttgctgag
aggacatgctgctgtttattctgcaagtgcattggaggggatggcacaatgggagatcct
ggaccaccgggcaaaaagggatccccaggctttaaaggcagtgagggctacctgggagag
gaaggcattgctggagaaagaggagccagtggaccagtcggggagcaaggtactaaggga
tgctatggcgccaaaggtccgaagggaaacaggggactaaatggacaggagggagaagtc
ggagaaagtggaattggtggattaaatggagaacagggtgaaagtggtcttcctggagaa
aaaggagaaaagggtgatgaaggatcccagggaagcccgggacagcgaggggtttctggt
gaccgaggcgcaaagggccagcgaggagaccctggagttcctggatttgacagcacaata
gaaggacccaagggcttgaaaggagaacgtggaagacaaggtagaagaggctggccaggc
ccccctggaacaccaggctccagaagaaagacagcagctcatggccgaaggggacataca
ggcccacaggggaaaacaggcatcccaggcccagatggacttgaaggctcatggggactt
aagggccctcagggtcccagaggagagactggtatgaaaggagaaaaaggaggtctggga
attaaaggtcctcaggggcctccaggaccaggaggagaagcagggagtccaggccatttg
ggaagccaaggaaataaaggggaacctggagatttgggagaaagaggacctattggcctc
cccggtcctcgaggcttgccgggcgatgatggccctccaggttatggtagcattggaagg
aaaggagcaaaggggcaagaaggatttcctggagaaagtggacctaagggtgagactggg
gaccgtggtggtccaggagaaactggacccaaaggagccagaggcaaaacgatatctgct
gggcttccaggagagatgggatcccctggggagccaggacctcctggacgcaagggtgtg
aaaggggccagaggattggcttcattttccacgtgtgagctcattcagtatgtacgagac
cacagccctggcggccatggaaaaccagaatgccccgtgcatcccaccgaattggtgttt
gccttggaccagtcccgggatgtcaccaggcaggagtttgagcgcatgaaggagctgatg
tcatccctggtgaggggcgtcagggtccgggagaacagctgcccggtgggcgcgcgcatc
gccgtcctcacctacagctcccacgcccggcacctcatccgcttctcagacgcctacaag
aagagccagctcctcagaaagattgaagctattccttacgagaggtcctcagacagcagg
gagatcggcaaagcgatgaggtttatctccaggaatgtcttcaagcgaacgctgccaggg
gcgcacacccgaaggatcgccaccttcttcagcagcggtcagtctactgatgcccagacc
attgccgcggccaccatggagttcggtgcccttgacatcattccggtcgtgatcgctttc
agcaacgtgccctccatcaagcgtgcatttgcgattgatgacactggcacattccaagta
ataatggttccatctgggaccgactacacgccaacgttagagagactccagcggtgcact
ttctgctatgatatatgcaagccggatgctttttgcgatcaagccagaccaccccctgtg
cagtcgtacgtggatgctgctttccttctggacagctcccgccatgtgggaagtgctgaa
tttgaagacataagacactttttgggagcactgttagatcactttgagatcacctccgag
cctgagacctctgtcactggagaccgggtggccctattaagccatgctccccccaacttc
ctccccaacactcagaagagtcctgttagaacggagttcaaccttaccacctacaacagt
aaacgcctcatgaagaggcacttggaagaatcagttcaacaactaaacggagacgctttc
attggtcatgccttacagtggaccctggacaatatctttttaaatacacccaatatgaga
agaaacaaagtcatatttgtgatatctgctggggaaaccagtcacttggacagggaaacc
ttaaagaaagaatccttgagagccaaatgtcaaggttatgccctatttgtgttttccctt
ggccccgcttggaatgacaaggaactggaagatttagccagctatcctttggatcaccac
ttggtccagcttggccgaattcataaacctgaccacagatacagtgtgaagtttgtgaga
tcctttgtaaactcaatcaggcgtgcaatcaacaaatatccaccaataaacttcaaaatg
aagtgcaatagattcagctctacagatctgaagcagcccccacagcagttgcaaagcttt
gttcttggaccacataaagctgctctcagggatgcattgcagagagccagattctttcaa
gacaaaaaatacctttcaagagtagcaagaggcagcagagacgatactgttcaaaatctt
atcagaaacacaccccatacctttaaaaatggaagaaaggtgataaaaactgctccaaga
caacaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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