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KEGG   Labeo rohita (rohu): 127162965
Entry
127162965         CDS       T09007                                 
Symbol
scn4ab
Name
(RefSeq) sodium channel protein type 4 subunit alpha B isoform X1
  KO
K04837  voltage-gated sodium channel type IV alpha
Organism
lroh  Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:lroh04040]
    127162965 (scn4ab)
Ion channels [BR:lroh04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   127162965 (scn4ab)
SSDB
Motif
Pfam: Ion_trans Na_trans_assoc PKD_channel IQ_SCN5A_C GPHH
Other DBs
NCBI-GeneID: 127162965
NCBI-ProteinID: XP_050961876
Position
3:27605377..27645588
AA seq 1806 aa
MASSTGTTERDPEVVAALLQQNVKMASLLPPTGTDVFRPFTLESLAKIERRMAEEAAEQE
QMKAQNVEVAEEDLPKPSSDLEAGKVLPFIYGDPPPDLLNVPLEELDPFYKAQKTFIVIT
KGNTIFRFNAEPACYVLSPFNPIRRVAIRILIHSLFSMFIMVTILSNCVFMTMSDPPAWS
KTVEYVFTGIYTFEALVKVLSRGFCIGDFTFLRDPWNWLDFMVITMAYLTEFVDLGNISA
LRTFRVLRALKTITVIPGLKTIVGALIQSVKKLADVMILTVFCLSVFALIGLQLFMGNLR
QKCVRSLDWSYSDNLTMLFNHTDISGTANNTFNYQEYIENPENHYYVPGHIDPLLCGNSS
DAGKCPEGYVCLKAGRNPNYGYTSYDNFAWAFLALFRLMTQDFWENLFQLTLRAAGKTYM
IFFVVIIFLGSFYLINLILAVVAMAYAEQNEATIAEAKEKEEEYAKILEQLKKQAEQQKN
NMVNGSKTSLSSKKKGDDDQMQNDYDGIALKPLSKSNGSKGSMNYLEVPDSQMRKPSAVS
ATDNALDELEEVQRPCPPCWYKFADIFLKWNCCVPWVKFKKFIYLIVMDPFVDLGITICI
VLNTVFMAMEHYPMTPHFEHMLSVGNLVFTGIFTAEMVLKLIALDPYYYFQVGWNIFDSI
IVTMSLVELGLANVQGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLA
IIVFIFAVVGMQLFGKSYKECVCKIAEDCELPRWHMNDFFHAFLIIFRVLCGEWIETMWD
CMEVAGQGMCIIVFMMVMIIGNLVVLNLFLALLLSSFSGDNLAASDDDGEMNNLQIAIAR
ITRGIDWVKAFVIGHVRQCLGLKPKEECVKENEESDSKMTTMNSTLSVVKVPIANGESDD
DDDGNSSSEEEDKEDVDKNTKSKDGDELSTCSTVDKPPEVEEVEVEEEEDSTIPEACYTE
NCIRRCPCLELDVTQGKGKTWWNFRKTCYAIVEHSYFETFIIFMILLSSGALAFEDIYIE
QRRMIKIILEYADQVFTYVFVIEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSLISLTANI
LGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFSI
MGVNLFAGKFSYCFNSTSDEMFTIDVVNNRSECLELMEFFPEVRWKNAKVTFDNVGMGYL
SLLQVATFKGWMDIMYSAVDSRTIDMQPEYEANLYMYLYFVIFIIFGSFFTLNLFIGVII
DNFNQQKAKIRGTDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNCCQGLVFDLVTKQFF
DIFIMVMICLNMVTMMMETDDQSEEMEDILSYINLVFIILFTGECILKITALRYYYFSIG
WNIFDFVVVILSILGIMLADLIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFAL
MMSLPALFNIGLLLFLIMFIFSIFGMSNFGYVKKEGGIDDMYNFETFGNSIICLFMITTS
AGWDGLLAPILNSPPDCDPDVENPGSSVRGNCGNAAVGIVFFCSYIVMSFLVVVNMYIAI
ILENFNVATEESSDPLCEDDFEMFYETWEKFDPTASQFITYSKLSEFCDTLKDPLRIPKP
NTLKLITMDLPMVPGDKIHCLDILLALTTEVLGDSDQMDAMKATMEEKFMANNPSKVSYE
PITNTLKRKQQEVSVSTIQRAYRKHILKRGLKQASYMYREKTNTKKRGEEAPEKVGMIAK
KMRYLYGDQAIEDDKPSGFSFSQHAKPQHGFKRPLVKVQSDVVLHSAPFPVPDSSAAKEN
LRESIV
NT seq 5421 nt   +upstreamnt  +downstreamnt
atggcctcgtcaactggcacaactgagagagaccccgaagtggtggcagccctccttcag
cagaatgtcaagatggcgagcctacttcctcccacaggcaccgatgtcttccggccattc
actttggagtcgctcgccaagatcgagcggcggatggcagaagaagccgccgagcaggag
cagatgaaggcccagaatgtcgaggtggctgaagaggatctgcccaaacccagcagtgat
ttggaagcaggaaaggtcctaccgttcatctacggagaccctccaccggatctcctcaac
gttcctttggaagagttggatccattctacaaagcacaaaaaacgttcatcgtgatcacc
aaagggaatacaatattcagattcaatgctgaacctgcatgctacgttctaagtccattc
aaccctattcgacgagttgccataagaatactcatacattcattatttagcatgttcatc
atggtaaccatcttgtcaaactgcgtattcatgacaatgagtgatcctccagcatggagc
aaaacagtagagtacgttttcactggcatctacacctttgaggcacttgtaaaggtgctg
tccagaggcttctgcattggtgatttcacattcctacgagatccgtggaattggctggat
tttatggtcatcacaatggcgtatctcacagagttcgtggacttggggaatatatccgct
ctgaggactttccgtgttcttcgggccctaaaaacaattactgtaattccaggtctcaaa
accattgttggcgccttgattcagtcggtgaagaaattggcggatgtcatgatcctcact
gtcttctgtctcagcgtgtttgcactcattggcctgcaactgttcatgggaaatttgcgg
caaaagtgtgtccgctctcttgactggagctacagtgataacctgaccatgctcttcaat
cacacagacatcagtggcactgccaacaatacattcaactaccaggaatatattgaaaat
ccggaaaaccactactatgtgcctggccacatagatccattactttgtgggaacagctct
gatgcagggaagtgccctgaggggtacgtatgcctgaaagctggccgaaacccaaattat
ggctacactagttatgacaactttgcgtgggctttcttagcccttttccggctaatgact
caagacttttgggagaacttgttccagctgactctccgcgcagctgggaagacgtacatg
atcttctttgtagtcatcatcttcttgggttcgttctacctcatcaatctgattttggct
gtggtggccatggcatatgctgaacagaatgaagccaccatcgcagaagcgaaagaaaag
gaggaagagtacgcaaaaatcctggaacagctcaagaaacaagctgagcagcagaaaaac
aacatggtgaatggcagtaagacatcactatccagcaaaaagaaaggtgatgatgatcaa
atgcagaacgactatgacgggatcgcattgaagcccctctcaaagtcaaatggatccaaa
ggtagcatgaattacttggaagtccctgactcgcagatgagaaaaccaagtgcagtgagc
gccacagacaatgctttagatgagctggaggaagttcaaaggccatgtcctccctgctgg
tacaagtttgctgacatattcctgaaatggaattgctgcgtgccatgggtgaaattcaag
aagtttatctacctaattgtaatggacccttttgtggatctgggcattaccatctgcatt
gtgctcaacactgtgttcatggctatggagcactatcctatgactccacatttcgaacac
atgttgtcagtgggaaacctggttttcacaggtatctttacagcagagatggtgctaaaa
cttattgcactggacccatattattacttccaagttggctggaacatttttgacagcatc
attgtgaccatgagcctggtggagctgggcttagccaatgttcagggcttgtctgtgctg
aggtccttccgtttgatgcgtgtgttcaagctggcaaaatcttggccaaccctaaacatg
ctgataaagatcatcggtaattcagtgggtgctcttgggaacctgacccttgtcctggcc
attattgtcttcatctttgctgtggtggggatgcagcttttcggaaaaagctacaaggag
tgtgtgtgtaagatcgcggaagattgcgagcttcctcgctggcacatgaacgatttcttt
cacgcgttcctcattatctttcgcgttctatgtggggagtggatcgaaacaatgtgggac
tgcatggaagtggctggccaaggcatgtgcatcattgtcttcatgatggtcatgattata
ggaaacctagtggtgttgaacctcttcctggctttgctgctcagctccttcagcggagac
aacctggcggcatctgatgatgatggggagatgaacaatctgcagattgccattgctaga
atcacaaggggcattgactgggtaaaggcttttgttatcggacatgtaagacaatgtctg
ggcctgaagccaaaggaagagtgtgtgaaagaaaacgaagaaagcgattctaaaatgacc
accatgaactccactctatccgttgtcaaagtgcctatagccaatggtgaatcggatgat
gacgatgatggcaacagctcctctgaggaagaagacaaagaggatgttgataaaaataca
aaaagcaaagatggagatgaattatcaacctgcagcacagtagacaaacctcctgaggta
gaagaggtggaagtagaggaagaagaggactccaccatccctgaggcctgctacacagag
aactgcatcaggcggtgtccttgcttggagcttgacgttacccaaggtaaagggaagaca
tggtggaatttccgtaaaacctgctacgccattgtggagcacagctattttgaaaccttc
atcatcttcatgatcctcctcagcagtggagctttagcatttgaggacatatatattgaa
caacgaagaatgattaaaatcatccttgaatatgcagatcaggtcttcacttatgtgttt
gtcattgagatgcttctgaaatgggtagcatatggtttcaaggtctatttcacaaacgca
tggtgttggctggactttctcatcgttgatgtgtccctgatcagtttgactgcaaacatc
ttaggctactctgaactgggggccattaagtctctcaggactttgagagcactgagacct
cttcgagcactctccaggtttgaaggaatgagggtggtggtgaacgccctggtaggagcc
attccatccatcttcaacgttctcctggtctgcctgatcttttggctcatcttcagcatc
atgggagtgaacctttttgctggaaagttcagctactgcttcaactcaacatccgacgaa
atgttcactatcgacgtggtcaacaatagaagtgaatgcttggagctcatggagtttttt
ccagaagtacgatggaaaaatgcaaaggttacctttgataacgtaggcatgggatacctc
tccctactgcaagtggcaacattcaaaggatggatggacatcatgtatagtgctgtggac
tctcgtactattgatatgcagccggagtatgaggcaaacctttacatgtacctttacttt
gtcatcttcatcatttttggctctttcttcactctcaatctattcattggtgtcatcatt
gacaatttcaaccaacaaaaggcaaagataagaggaactgatatcttcatgacagaggag
cagaaaaaatactacaatgccatgaagaagcttggctccaaaaagccacagaaaccaatt
ccaaggcctacgaactgctgccaaggtttagtattcgacctggtcaccaagcagttcttc
gacatcttcattatggtaatgatctgcctgaacatggtgaccatgatgatggagacagat
gaccagagtgaagagatggaagatattctgtcctatatcaaccttgtcttcatcatactc
ttcaccggggagtgcattctcaagatcaccgccctgcgctattactacttttccattggg
tggaacatttttgattttgtggtggtcattctttcaatcttaggtattatgctggcagat
cttatcgagaagtacttcgtgtcacctacgctgttccgcgtcatccgactggccagaatc
ggccgtgtcctgcggctcatccgtggcgccaagggaatccggacattactgtttgcgctg
atgatgtcacttcctgccctcttcaacatcggcttgcttctattcctaatcatgtttatt
ttctccatatttggcatgtccaactttggctatgtgaaaaaagaaggaggcattgatgac
atgtataatttcgagacctttgggaacagtatcatatgcttgttcatgatcacaacctcc
gccggctgggatggactgctggcacctatactcaacagcccaccagactgcgacccggat
gtggagaacccgggatcgagtgtccgaggcaactgtgggaacgctgcggtaggcatcgtc
ttcttctgcagctatattgtcatgtccttcctcgtcgtggtcaacatgtacatagccatt
atcctggaaaacttcaacgtagccacggaagaaagcagcgaccccttgtgcgaggacgac
tttgagatgttctatgaaacctgggagaaattcgaccccaccgcctctcaattcatcact
tacagtaagctgtccgaattctgcgacacgctaaaagaccccttgagaatccccaaaccg
aacaccctcaagctgatcacaatggaccttcccatggtccctggtgataagatccactgt
ctcgatattctcctagccctcacaacagaggtgctgggagattctgaccagatggatgcc
atgaaagcaactatggaggagaagttcatggccaacaatccttcgaaggtttcgtatgag
cccatcaccaacactctcaaacggaaacaacaagaagtgtccgtttcgaccatccaaaga
gcttaccgcaagcacatcctcaaacgtggcctcaaacaagcctcatacatgtacagagag
aagacgaacacaaagaaacgaggtgaagaggctccagaaaaagtgggaatgatagctaag
aaaatgaggtatctgtatggagatcaagccattgaggatgacaaaccttcaggtttctcg
ttctctcaacatgcgaagccacagcatgggtttaagcgtcctctggtgaaagttcagagc
gatgtggtcttgcactctgccccttttcccgttcctgactcatctgccgctaaagaaaac
ttgagggagtctattgtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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