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KEGG   Labeo rohita (rohu): 127166202
Entry
127166202         CDS       T09007                                 
Symbol
rxrab
Name
(RefSeq) retinoic acid receptor RXR-alpha-B isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03320  PPAR signaling pathway
lroh04148  Efferocytosis
lroh04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    127166202 (rxrab)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lroh03000]
    127166202 (rxrab)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:lroh03310]
    127166202 (rxrab)
Transcription factors [BR:lroh03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    127166202 (rxrab)
Nuclear receptors [BR:lroh03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   127166202 (rxrab)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 127166202
NCBI-ProteinID: XP_050967275
Position
5:complement(13573850..13647686)
AA seq 509 aa
METKPFLSLGLLKNPCSVAPPCLRSRPGDAGSSPNGCSGFTGAYPLQQRRISTDSSGQLS
SSPLSSSAGHRGITNHPLHPPLLSPSAMSSSPGQLHSPISTLSSPINGLPSPFPVISSPM
GHPSMSGPSSTGMTFRPSLSPQLSSPMNAVNSSEDIKPPLGLNGVMKVPAQPTGTSLSLT
KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCIIDKRQRNRCQYCR
YQKCLAMGMKREAVQEERQRAKERSEGEFGSCANEDMPVEKILEAELAVEPKTETYVEAN
LSAPANSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASF
SHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI
VLFNPDSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCL
EHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1530 nt   +upstreamnt  +downstreamnt
atggaaaccaaaccattcttgtctctagggctcctgaaaaacccctgctcagtagcgccg
ccgtgtttgcggagccggccgggcgacgctggcagttcgcccaatggctgctccggcttc
acgggtgcatacccgctacagcagcgcaggatatccacagactcctccggtcagctctcg
tcgtctcctctgagctcctccgcgggtcaccgaggcatcactaaccaccctctccaccct
cccctgctaagcccatccgccatgagctccagcccgggtcagctgcactcgcccatcagc
accctcagctcacccatcaacggcctaccttcaccgttccccgtcatcagctcgcccatg
ggccatccctccatgagcggcccgtcctccaccggcatgaccttcagacccagtctgagc
ccacagctgagttcacccatgaatgcagtcaacagttcggaggacattaaaccccctctg
ggtctgaacggggtgatgaaggtcccagcgcagcccacaggcacatccctctccctcact
aaacacatctgtgccatttgcggagaccgttcatcaggtaaacactacggggtgtacagc
tgtgagggctgtaagggcttcttcaagagaacggtgagaaaggatttgacgtacacttgc
cgagacaacaaggactgtataattgacaaacgccaacgcaaccgctgccagtactgccgc
tatcagaagtgcttagccatgggaatgaagagagaagccgttcaggaggagcggcagcgg
gcgaaggagcggagcgagggtgagttcggcagctgtgccaacgaggacatgcccgtggag
aagattctggaagccgaactggcagtggaaccaaagacggagacctacgtggaggccaac
ctgagtgcgcctgccaattctccaaatgacccagttacaaacatctgccaagcagctgac
aagcaactctttaccttagtggagtgggccaagcggatacctcacttttctgatctcccg
ctggacgatcaagtcatcctcctgcgagcaggctggaatgaactcctgatcgcctctttt
tcgcatcgttccatagcagtgaaagatgggatattattagctacaggccttcacgtccat
agaaacagcgcacatactgctggtgtgggagccatctttgacagagtgctgacggagctt
gtgtcaaagatgagagacatgcaaatggacaagactgaacttggatgcctgcgggccatt
gttctcttcaatccagattcaaaaggcctgtctaatccatcagaagtggaggcattgagg
gaaagagtgtatgcatctctagaggcctactgtaaacacaaataccctgatcagcctggg
agattcgccaagctgttactgcgtctgcctgccctgcgctccatcggcctgaagtgtctt
gaacatctcttctttttcaagttaatcggagacacacccatcgacactttcctaatggaa
atgctcgaagcgccacaccaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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