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KEGG   Larimichthys crocea (large yellow croaker): 104924865
Entry
104924865         CDS       T04659                                 
Symbol
rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03320  PPAR signaling pathway
lco04148  Efferocytosis
lco04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:lco00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    104924865 (rxra)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lco03000]
    104924865 (rxra)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:lco03310]
    104924865 (rxra)
Transcription factors [BR:lco03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    104924865 (rxra)
Nuclear receptors [BR:lco03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   104924865 (rxra)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4
Other DBs
NCBI-GeneID: 104924865
NCBI-ProteinID: XP_019127103
Position
IV:2817650..2921398
AA seq 504 aa
METKPFLSLGFLKPQCSLAPPMQRGRSSEPCSCFSGMCPLHQRRLSSDSSGQMTSSPLSS
PTSHRGMHPSLLSPTSMGPSGSLHSPISTLSSPMNGLASPFSVISSPMGPHSMNSPGMGY
GPSVSPQMFQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSGTALSLTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKRE
VLLHAAVQEERQRAKDRNENEVESTSCANEDMPVEKILEAEQAVEPKTETYIETNLGVPS
NSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI
AIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP
DSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggaaaccaaaccattcttgtcattggggttcctgaagccccagtgctcgttggctcct
cccatgcaacgaggtcgctcaagcgagccttgttcctgcttcagtggcatgtgtccactc
catcagcgccgcctatcctcagactcgtcgggccagatgacctcatcgcccctcagctca
cctacatcccaccggggaatgcacccgtctctgcttagcccaacgtccatgggaccctct
gggtctcttcactctcccatcagcacgctgagttcgcccatgaacggcctggcctcaccc
ttctctgtcatcagctcgcccatggggccccactccatgaactcacccggcatgggctac
ggccccagcgtaagcccccagatgttccagctgaactctccgatgaactcggtcagcagc
acggaggacattaagcccccgctgggactcaacggcgtgatgaaggtgcccgcccagccc
tcaggcacggccctgtcgctcaccaaacacatctgcgccatctgcggtgaccgctcctca
ggcaaacactatggggtatacagctgtgagggctgcaaaggtttcttcaaaaggacagtg
cgcaaagacctgacctatacctgtcgtgacaacaaggactgtgtcattgataagcgccag
aggaaccgctgccaatactgtcgctaccagaagtgtttagccatgggcatgaagagagaa
gttttgttacatgcagccgttcaggaggagcgccaacgagccaaggacagaaatgagaat
gaggtagaatccaccagctgcgccaacgaggacatgcccgtggagaagattctggaggcc
gagcaggcagtggaacccaaaaccgagacgtacattgagaccaacctcggtgtgccatcc
aattcgcctaacgacccagtgacaaatatctgtcaggcggctgacaaacagctcttcact
ctggtggagtgggccaagaggatcccccacttctctgagctgccactggacgaccaggtc
atccttctacgagcaggttggaatgaactcctcatcgcatcattttcgcaccgctcgata
gcgattaaagacgggatcctgttggcgaccgggctgcacgtccaccgcaacagtgcccat
agcgccggagtgggagcaatctttgacagagtgctcacagaactggtgtcaaagatgagg
gacatgcagatggataagacagaactggggtgccttcgagctatagtccttttcaaccca
gactctaaaggtttatcaaaccccagtgaggtagaagctctgagagagaaagtgtatgca
tctttagaggcctactgcaaacagaagtaccccgagcagcctggcagattcgccaagctg
ttgctgcggttaccggcgctacgctccatcggcctcaagtgtctggagcacttgttcttc
ttcaagctcatcggcgacacgcccatcgacaccttcctcatggagatgctagaagcccct
catcaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (44)   

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