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KEGG   Kryptolebias marmoratus (mangrove rivulus): 108248576
Entry
108248576         CDS       T05608                                 
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A isoform X1
  KO
K04837  voltage-gated sodium channel type IV alpha
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:kmr04040]
    108248576 (scn4aa)
Ion channels [BR:kmr04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   108248576 (scn4aa)
SSDB
Motif
Pfam: Ion_trans Na_trans_assoc IQ_SCN5A_C PKD_channel IQ DUF1492 PepSY_TM
Other DBs
NCBI-GeneID: 108248576
NCBI-ProteinID: XP_037836847
Position
LG17:23503755..23530760
AA seq 1878 aa
MATLLPCPGTNFFRRFTQESLVEIKRLAEDRKKAAEVEGHVEEEPLAPHPDLEAGKNLPL
IYGDPPPELLNTPLEDLDPFYKAQKTFVVISKGNTIFRFNADPACYILSPFSVVRRGAIK
ILIHSLFSMFIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTFEATVKVLSRGFCVGSF
TFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQS
VKKMSDVMVLTVFALAVFALVGLQLFMGNLRQKCVRWPIQSELFDATSNDTLNFNTTLGV
NETMYSNSTFSFIEYIENSENHYFLEGSHDALVCGNSSDAGKCPEGYTCMKAGLNPNFGY
TSFDSFGWSFLALFRLMTQDFWENLFQLILRAAGRTYMLFFVVVIFLGSFYLINLILAVV
AMAYDEQNQATQREAIEKEEEFQRMLEQLKNQEQAQVHGSRATLTSKKSLSQHTASEKSD
YENNPKHDEAIKDCNGRIIPQLMIRAPTVDESAVDYELRKKSLDSLHSTLHLDEPGLKQR
SGSATTVLTVAAMEELEEAQRPCPPCWYKFADTFLKWDCCVSWIVFKKWVHFVVMDPFVD
LAITICIVLNTLFMAMEHYPMTPEFDSMLSVGNLVFTGIFTAEMVFKLIAMDPYYYFQVG
WNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALG
NLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKISEDCELPRWHMNDFFHSFLIVFRILCGE
WIETMWDCMEVAGPAMCLIVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSGGDEDGEMNN
LQIAIGRITRGINWLKAFIIRRVQQVLGRKPKEPDEGSVDVDSKAEAIEMNHLDTCPTFK
VADGMFDCPVEGRPSGFIVDGEDCLNVPIAEGESDFENLSEDDEDDEEDGDNSEMAYETD
TQQNTKPFEDETCNPGHVKLMGALEDDDSSVCSTVVHQSPEPEPEEVEEEEPEPEEPESC
FTDNCVMKWPCLTVDISSGKGKLWWNLRKTCFTVVEHDYFETFIIFMILLSSGALAFEDI
HIERRRTIKIILEYADKVFTYIFVIEMLLKWVAYGFKTYFTNAWCWLDFFIVDVSLISLV
ANWLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLI
FSIMGVNLFAGKFYRCINTTTGELFPMSEVNNHSECMALKEATQEARWINVKVNYDNVGQ
GYLSLLQVATFKGWMDIMYAAVDSREVGEQPSYEINLYMYLYFVIFIIFGAFFTLNLFIG
VIIDNFNQQKKKFGDKDIFMTEEQKKYYEAMKKLGSKKPQKPIPRPTNPIQGMVFDFISQ
QFFDIFIMVLICLNMVTMMVETDNQSPEKEDFLFKLNVAFIVVFTGECVLKLFALRQYFF
TNGWNIFDFIVVILSIAGTMLSDLIEKYFVSPTLFRVIRLARIGRILRIIKGAKGIRTLL
FALMMSLPALFNIGLLLFLLMFIFAIFAMSNFAYVKKEAGLDDIFNFETFGGSIICLFQI
TTSAGWDGLLLPMLNREAPDCDPECENPGTAVRGNCGSPMMGMVFFCSYIIISFLVVVNM
YIAIILENFNVAQEESGDALCEQDFEMFNETWEKFDLNGTMFIEYIHLSDFCDALQEPLK
VPKPNMLHLIKMDLPLVIGDRIHYLDVLLAVTQMVLGDTVEMAAMAKSVETKFTLSNPTK
DSFAPITTTVRHKEEQRAAVVIQRAYRNHLLKRCIRHAAFMHRLKRMGRKDEGDSPEKEG
LLARRMGVLYGSNTDLAEEMERNYLQFLNTETTSRCKGSQCDEEPPEPNVIVVPVEITNE
VLLHAAPNRQESLKESVV
NT seq 5637 nt   +upstreamnt  +downstreamnt
atggcgaccctgctcccttgcccaggcaccaacttcttccgccgcttcacccaggaatcg
ctggtggaaatcaagaggctcgcagaggacaggaagaaagcagcagaagtagagggccat
gtcgaggaagaaccgctggccccacatcctgatctggaggctgggaagaacctgccccta
atctacggagaccctcctccggagctgctcaacacgcctctggaggacctggaccccttc
tacaaagcacagaaaacattcgtcgtgatcagcaaaggaaacacgatcttcaggttcaac
gccgacccggcttgttacattctgagcccatttagcgtggtccggagaggagccatcaaa
attctcatacattcgttatttagcatgttcatcatgatcacaattttatcaaattgtgtt
ttcatgacgatgagtaacccaccagcatggagtaaaacagtcgagtacgttttcactggt
atttacacctttgaggcaacagtcaaagtgttgtcgagaggcttctgtgttggttctttt
acattccttcgagatccatggaactggctggatttcatggtgatcagcatggcttacgtc
actgagtttgtcgatcttggcaacgtgtcggccctcaggacatttcgagtacttcgagcc
ctaaaaacaattactgtgatccctggcctgaagacgatcgtgggtgctttgatccagtcc
gtgaagaaaatgagcgatgtcatggtcctgacggtcttcgccctcgccgtttttgccctc
gttggtcttcagctcttcatggggaacctgcgtcagaaatgtgtgcgatggcccattcag
agcgaactcttcgatgccacgtcaaacgacacgctgaacttcaacaccaccttgggtgtc
aatgagacaatgtattccaacagtaccttcagttttattgaatatattgaaaactcggaa
aatcactattttttggagggcagccatgatgctctagtttgtggcaacagctctgatgct
ggaaagtgcccagaaggatatacgtgcatgaaggcagggttgaaccctaactttggttac
accagcttcgactcctttggctggtcctttcttgccctcttcagactcatgacgcaggac
ttctgggagaaccttttccaactgatcttacgagcggccggtaggacatacatgctcttc
ttcgtggtggttatctttctgggctccttctacctcatcaacctcatcctggctgtggtg
gccatggcttacgacgagcagaatcaagcaactcaacgggaggccatcgaaaaagaggaa
gagttccagcgtatgttagaacaactcaaaaatcaagagcaggctcaggttcatggaagt
cgagcgactctgaccagtaaaaagtcactcagtcagcacacagcgtctgaaaagtcagat
tatgagaataatcccaaacacgacgaggctataaaggactgtaatgggagaattattccc
cagctgatgatcagagcgcccaccgtggacgagtctgctgtagattacgagctgagaaag
aagtcactggactcgttgcacagcacgcttcatctagacgaaccgggcctgaaacagaga
tctggaagtgctacaactgtccttactgtagccgctatggaagagttggaggaggctcag
aggccgtgcccgccatgctggtacaaatttgcagacacgttcttgaagtgggactgctgt
gtgtcctggattgtctttaagaagtgggtacactttgtggtcatggaccccttcgttgac
ctggcaattaccatctgcatcgtgctcaacacccttttcatggccatggagcactatccc
atgaccccggagtttgacagcatgctctccgtgggaaacctggttttcaccgggatcttc
acagctgagatggttttcaagcttatcgccatggatccttattactactttcaagttggc
tggaacattttcgacagcatcattgtcaccctcagcctggtggagctggggctggcgaac
gtccagggtctgtcagtccttaggtccttccgtttgcttcgcgtcttcaagctggcgaag
tcttggcccacgctgaacatgctgatcaagatcatcggtaactcagtgggagctttagga
aacctgactctggtgctggccatcatcgtcttcatttttgccgtcgtgggcatgcagctc
ttcggaaagagctacaaggactgcgtgtgcaagatctcggaagactgcgagctgccgcgc
tggcacatgaacgacttcttccactcgttcctcatcgtgttccgcatcctgtgcggcgag
tggatcgagaccatgtgggactgcatggaggtggcgggtcctgccatgtgtttaatcgtc
ttcatgatggtcatggtcatcggaaacctagtggtgttgaacctcttcctggccttgctg
ctcagctctttcagtggagacaacctctcaggaggggacgaggatggagagatgaacaat
ctccagattgccattggcagaatcacacggggcatcaactggcttaaagcgtttatcatt
cgaagagtccagcaggtcctcggcaggaagcccaaagagcccgatgagggttcggtggat
gtcgactcgaaagcagaagcaatcgagatgaaccacctggacacctgtccgacttttaaa
gtggcagacgggatgtttgactgtccagttgaaggccggccctctggattcattgtggat
ggagaagactgtctgaatgtgccgatcgctgagggagaatccgattttgaaaatctgagt
gaggacgacgaggatgatgaagaggatggagacaactcagaaatggcatacgagacagat
actcaacaaaatacaaaaccctttgaagatgaaacttgtaacccaggacacgtcaaactg
atgggcgctttggaggatgacgattcttcggtgtgtagtacggtagtccaccaatctcca
gagcctgaacctgaagaagtagaagaagaagaaccagagcccgaggagccagaatcctgc
ttcactgacaactgcgtgatgaaatggccgtgtctgactgtggacatttctagcggcaaa
gggaagctttggtggaatcttcgtaagacttgcttcactgtcgtggagcacgactatttt
gaaaccttcataatcttcatgatcctcctcagcagcggagctctggcttttgaagacata
cacattgaaagacgccggaccatcaaaattattctggagtacgctgacaaggttttcacc
tacatctttgtcattgagatgctccttaaatgggtcgcgtacggcttcaagacatatttc
accaacgcttggtgctggttagactttttcattgtggatgtttccctgattagtttagtt
gccaactggctgggatactcggaccttggaccgatcaaatccctcagaaccctcagagca
ctaaggcctcttcgagcactgtcaagattcgaaggcatgagagttgtggtgaacgcgctc
gttggagcgattccctccatcttcaacgtgctgctggtgtgtttgattttctggctcatc
ttcagcatcatgggcgttaacctgtttgctgggaagttttatcgttgcatcaacaccacc
acgggggagcttttccccatgtcggaggtcaacaatcacagcgaatgcatggccctcaag
gaagccacgcaggaggctcgctggattaacgtcaaagtcaactatgacaatgttggacag
ggctacctgtctctgcttcaagtggcaacttttaaaggttggatggacattatgtacgct
gctgtggactcaagagaggttggggaacaaccctcctatgagatcaacctttacatgtat
ctatattttgtcatcttcatcatctttggtgctttcttcaccctaaacctcttcatcggc
gtcattattgacaacttcaaccaacaaaagaaaaagtttggagacaaggatatttttatg
actgaagagcagaaaaagtactacgaggccatgaagaaacttggctcgaagaagccgcag
aagccgattccacggccaacaaacccgatccagggcatggtgtttgacttcatcagccag
cagttcttcgacatcttcattatggttctcatctgcctcaatatggtgaccatgatggtg
gaaacggataaccaaagcccagagaaggaggatttcctttttaaactgaacgtggctttc
atcgtcgtcttcaccggagagtgtgtgttgaagctctttgctctgcgacagtacttcttc
accaacggctggaacatctttgatttcattgtggtcatcctgtcgatagctggtacaatg
ctctcagatttaatcgagaagtacttcgtgtcaccgactctcttccgggtgatcaggctg
gccaggattggcaggattctgcgtattatcaaaggagctaagggtattcggacgcttctc
tttgctctgatgatgtcccttcctgccctcttcaacattggtctcttgctcttccttctc
atgttcatcttcgccatctttgccatgtcgaatttcgcctacgtcaaaaaggaggcagga
ctcgatgacatttttaactttgagacgtttggcggcagcattatctgcctgttccagatc
acaacatcggcaggctgggacgggcttttacttccgatgctgaacagggaggctccggac
tgcgatccggaatgcgaaaacccaggcacggccgtgagaggtaactgcggcagcccgatg
atgggcatggtgttcttctgcagctacatcatcatctccttcctggtcgtggtcaacatg
tacatcgccatcatcttagagaacttcaatgtcgcccaggaggagagcggcgacgccctc
tgtgagcaagactttgagatgtttaatgagacgtgggagaagttcgatctgaacggaacg
atgttcatcgagtacatccacctctcagatttctgcgatgccttgcaggaaccactgaag
gttcccaagccgaatatgctccacctgatcaagatggatctgcccctggtgattggggac
aggatccactacctggatgttctgctggccgtcacgcagatggtcctgggagacacggtg
gagatggcggccatggcgaagagcgtcgagactaagttcactctgagcaaccccacgaaa
gactcctttgcaccaataaccacaaccgtacgccacaaagaagagcagagggctgccgtt
gtcatccagagggcttaccgcaaccatcttctgaagcgttgcatacgccacgctgctttc
atgcaccgattgaagaggatgggtagaaaggacgaaggtgacagtcctgaaaaggagggg
ttgcttgctcgaaggatgggggtgctctacgggagtaatacagacctcgctgaggaaatg
gagcgaaattatttacaatttctaaacacagagacaacgtcacgctgtaaagggtcccaa
tgtgacgaagagccccctgagccaaatgttattgttgtccctgttgaaatcacaaacgag
gtgttgttacatgctgcccccaatcgacaggaaagcctgaaagagtcagttgtatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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