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KEGG   Ictalurus furcatus (blue catfish): 128625475
Entry
128625475         CDS       T09387                                 
Symbol
rxrab
Name
(RefSeq) retinoic acid receptor RXR-alpha-B isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
ifu  Ictalurus furcatus (blue catfish)
Pathway
ifu03320  PPAR signaling pathway
ifu04148  Efferocytosis
ifu04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:ifu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    128625475 (rxrab)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ifu03000]
    128625475 (rxrab)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:ifu03310]
    128625475 (rxrab)
Transcription factors [BR:ifu03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    128625475 (rxrab)
Nuclear receptors [BR:ifu03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   128625475 (rxrab)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1 tRNA_bind_3
Other DBs
NCBI-GeneID: 128625475
NCBI-ProteinID: XP_053509773
Position
22:8733737..8802797
AA seq 504 aa
METKPFLSLGFLKSSCSVVPPCVQGRPGNAGSSPSGCSCFTGTCPLHQRRISTDTSGQLH
SSPLSSPTGHCAVGPQPLHPSLLTPSSMGSTPGQLHSPINGLASPFPVISSPMGHPSITG
PSSTSMAFRPSLSPQLSSPMTSVSSPEDIKPPLGLNGVMKVPAQPTGTCLSLTKHICAIC
GDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCPIDKRQRNRCQYCRYQKCLAM
GMKREAVQEERQRAKEKSEAELELAGCTSEDMPVEKILEAELAVEPKTETYVEGSIGATA
NSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSI
SVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIVLFNP
DSKGLSNPTEVEALRERVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggaaaccaaacctttcttgtcgctagggttcctgaaaagctcgtgctcagtagtgcca
ccctgtgtgcagggccggccgggcaatgctggcagctcgccctcgggctgctcctgcttc
acgggcacatgcccgctgcaccagcgcaggatatccacagacacatcaggccagctgcac
tcgtctcctctgagctccccgactggacactgtgctgttggccctcaaccgctccacccg
tccctgctcaccccgtcttccatgggctccactccgggtcagcttcactcacccatcaat
ggcctagcatcgcccttccccgtcatcagctcacccatgggccatccctccatcaccggg
ccttccagcaccagcatggccttcagacctagtctcagtccacaactcagttcccccatg
acttcagtcagcagcccggaagacatcaaacctcctctgggcctgaatggcgtcatgaag
gttccagctcagccgaccggcacctgtctgtctctcaccaaacacatctgtgccatctgc
ggcgatcgatcttcaggtaaacactatggagtgtacagctgcgaaggctgcaaaggcttc
ttcaagcgcacggtgaggaaagacctgacttacacctgccgagacaacaaggactgtccg
atcgacaaacgccaacgcaaccgctgccagtactgccgctaccaaaagtgtttggccatg
ggcatgaagagagaagctgtacaggaggagcggcagcgggcgaaagaaaagagtgaggct
gaattggagctggcgggctgtaccagtgaagacatgccagtggagaagattctggaagct
gagctggcagtggagcccaaaaccgaaacctatgtggaaggcagcattggtgcgactgcc
aactctcccaacgaccccgttacaaacatttgccaagccgctgataagcagctcttcaca
ttagtggaatgggcgaagaggataccacacttttccgacctacctttagatgaccaggtc
attcttttacgagcagggtggaacgagctcctcatcgcttctttctcacaccgctcgata
agtgtgaaagatggcatattgttagcaaccggcctccacgtccatagaaacagtgcacat
agtgctggagtaggtgccatttttgatagagtactgacagagctggtgtctaagatgcga
gacatgcagatggacaagtctgagcttggatgcctgcgagctatcgttcttttcaatcca
gactctaaaggcctgtctaacccaacagaggtggaggcacttagagagagagtttacgct
tcactggaggcctactgtaaacagaaataccccgatcagcctgggagatttgcaaaactg
ctactccgactgcctgctctacgctccatcggtctaaagtgtctggagcacctctttttc
ttcaaactcattggagacacacccattgacacatttctaatggaaatgctagaggcacca
caccaaatgacgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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