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KEGG   Hippoglossus stenolepis (Pacific halibut): 118114206
Entry
118114206         CDS       T08308                                 
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03320  PPAR signaling pathway
hsp04148  Efferocytosis
hsp04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    118114206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hsp03000]
    118114206
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:hsp03310]
    118114206
Transcription factors [BR:hsp03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    118114206
Nuclear receptors [BR:hsp03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   118114206
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1 RGI1
Other DBs
NCBI-GeneID: 118114206
NCBI-ProteinID: XP_035020409
Position
8:complement(14608936..14616273)
AA seq 448 aa
MSSQQPNSSASNSPTNILGSPFSVISPSLNSPVVSPSLGFGPISNSQISSSASISGMHSI
SSSEDIKPPFGLRPMPAHSPGIMLSQKRLCVICGDRSSGKHYGVYSCEGCKGFFKRTVRK
DLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREGMQEVVKHVKWIKEDGKDEGWM
TVQEERQRNREREGELEFSVGVNEEMPVEKILEAETAVEQKTELHSDGGSAGNSPHDAVT
NICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAMKDGVLL
ASELQRDSAHSAGVGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIV
LFNPDAKGLSNTSEVELLREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLE
HLFFFKLIGDTPIDTFLMEMLEAPHQLS
NT seq 1347 nt   +upstreamnt  +downstreamnt
atgtcctcacagcagcccaacagctcagcctccaacagccccaccaacatcctgggttct
cctttctcagtcattagtccctcacttaactcccccgtggtctccccctctctgggattt
ggacccatcagcaacagtcagatctcttcctcagcgtccatatcagggatgcactcgatc
agcagctcagaggatatcaagcctccatttggcttgaggcctatgccagcccacagccct
ggaataatgttgtctcagaaacgcctgtgcgtcatctgtggagaccgctcttctggcaag
cactatggcgtgtacagctgtgagggttgcaaaggtttcttcaaacgaactgtgcgtaaa
gacctgagctacacctgcagggataacaaagagtgcctggtcgacaaacgccagcgcaat
cgctgccagtactgccgctaccagaagtgcctggccatgggcatgaagagggaaggtatg
caagaagtggtcaaacatgtaaaatggataaaagaagatggaaaagatgagggatggatg
acggtccaggaggagcgccagaggaatcgagagcgcgaaggagagctggagttcagcgtt
ggagtgaatgaggagatgcccgtggagaagatcttggaggcagagacggcagtggagcag
aagaccgagcttcattcggatggaggctctgcaggcaactctccccatgatgcagtcacc
aacatctgtcagactgccgacaaacagctgtttgccttggtggagtgggcaaagagaatc
cctcatttctctgaactgccccttgatgaccaggtcatccttttgcgtgcagggtggaat
gagctccttatcgcctcgttctcccatcgctccatcgctatgaaagatggagtcctcctt
gcctctgagctgcagcgagacagtgcacatagtgcaggagttggagctattttcgacagg
gagagtgtgcagagtgcagaggtcggcgccatatttgacagggttcttaccgagcttgtc
aacaaaatgagagatatgcaaatggacaaaacagagctgggctgcctccgagccatcgtc
ctcttcaatccagatgcgaaagggctttccaacaccagtgaggtggagctcctgagagaa
aaggtctatgcatcattggaatcctactgcaaacagaaataccccgagcagcagggaagg
tttgccaagctccttcttcgactgccagcactaagatccattggcttgaagtgcttggag
catctcttcttcttcaagctgatcggtgacacacctattgacactttcctcatggaaatg
cttgaagctccccatcagttgtcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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