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KEGG   Hippoglossus stenolepis (Pacific halibut): 118100914
Entry
118100914         CDS       T08308                                 
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A isoform X1
  KO
K04837  voltage-gated sodium channel type IV alpha
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:hsp04040]
    118100914 (scn4aa)
Ion channels [BR:hsp04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   118100914 (scn4aa)
SSDB
Motif
Pfam: Ion_trans Na_trans_assoc IQ_SCN5A_C PKD_channel IQ
Other DBs
NCBI-GeneID: 118100914
NCBI-ProteinID: XP_035002339
Position
21:complement(18128357..18149659)
AA seq 1902 aa
MAPVLPPRGADAFRPFSQESLAEIERVKEERKKAAEVEGHEDETTEAPNADLEAGKSLPM
IYGDPPSEMLNTPLEDLDPFYKGQNTFVVITRGNTIFRFNAEPACYILSPFSLLRRGSIK
ILIHSLFSMFIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTVEATVKVLSRGFCVGSF
TFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVAALIQS
VKKMVDVMILTVFALAVFALIGLQLFMGNLRHKCVLWPIETSNETSFEFFNTTATFGDTV
SHDGTMGVNQTTYSNSTFDFMEYIQNSDNHYFVEGSLDALLCGNSSDAGMCPEKFTCMKA
GRNPNYGYTSFDSFGWAFLALFRLMTQDYWENLFQLILRAAGKTYMLFFVVIIFLGSFYL
INLILAVVAMAYDEQNQATQREAIEKEEEFQRLLEQLRNQDQPLNLGSRATLTSKKSLSH
HTSSQLGDDELSLECDDIVKDCNGRVIPNILIRAPTMVKSAADYELEERSLGSVHSMIHL
DGPGLTQRTASAMTVLTAAAMEELEDAQRPCPPGWYKFADKFLKWDCSPSWVVFKNWMYV
VVMDPFVDLTITICIVLNTLFMAMEHSPMTPEFEYMLLVGNLVFTGIFTAEMVFKLVAMD
PYYYFQVGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKII
GNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKDCVCKISLDCELPRWHMHDFFHSFLI
VFRILCGEWIETMWDCMEVAGAGMCLVVFMLVMVIGNLVVLNLFLALLLSSFSGDNLSAG
DEDGEMNNLQIAIGRITRGIDWFKAFVVRIVQQNLDKKPRGPEEGPTDGSEPKTEGIEMN
HLDTCQDFKMADGISNCLVEGRPSGLPVDGELSLNVPIAQGESDFENLGEEDDEDDDDDD
DADDAIDLEMLDEESNQNTENSEDECNMPRKLMGALCDGDSSICSTVDYQPPEPEPEEVE
EEEPEPVEPEACFTDECVSRWPCLTVDITQGRGKKWWNLRRACFTIVEHDWFETFIIFMI
LLSSGALAFEDIYIERRRTIKIILEYADKIFTYVFVIEMLLKWVAYGFKTYFTNAWCWLD
FFIVDISLISLVANWMGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIF
NVLLVCLIFWLIFSIMGVNLFAGKFYRCINTTTEELFPLTEVNNRSDCMAMEEATQEARW
VNVKVNYDNVGQGYLSLLQVATFKGWMDIMYAAVDSREVEEQPSYEINLYMYIYFVIFII
FGAFFTLNLFIGVIIDNFNQQKKKFGDKDIFMTEEQKKYYEAMKKLGSKKPQKPIPRPTN
LIQGVVFDFISQQFFDIFIMVLICLNMVSMMVETDNQSPEKEDFLFKLNVSFIVVFTGEC
LLKLFALRQYFFTNGWNVFDFVVVILSIAGTMLSDIIEKYFVSPTLFRVIRLARIGRILR
LIKGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKGAGIDDIFNFE
TFGGSIICLFEITTSAGWDGLLLPMLNSNFPDCDPNFENPGTDVKGNCGNPGMAMIFFCS
YIIVSFLVVVNMYIAIILENFNVAQEESGDALCEDDFEMFNETWEKFDLDGTQFIEYSRL
SDFCDTLQEPLRVAKPNLLRLIEMDMPLVIGDRIHCLDVLLAVTKIVLGDTVEMAAMKES
IEAKFILNNPTSDSFAPITTTMRHKEEQMAAVVIQRAYRTHLLKRCIRHAAFMHRSKRSG
KKDGSGDPPEREGLLARKLGVLYGSNAELAEEMEQAALETLANQEPLTPETVPQHTGAQC
GPEPPEPHVMVVPVEITNEVLLHSAPDRQLFPVDANLRESIV
NT seq 5709 nt   +upstreamnt  +downstreamnt
atggcgcccgtgctccctccccgaggcgccgatgcgttccgccccttcagccaggaatca
ctggcggagatcgagagggtcaaggaggaaagaaaaaaggctgcagaagtagagggccat
gaggacgaaacgacagaagccccgaacgccgacctggaggcggggaagagcctgcccatg
atctacggagaccctccatctgagatgctcaacacacctctggaggacctggaccccttc
tacaaaggacagaacacattcgttgtgatcaccagaggaaacacaatcttcaggttcaac
gctgagccggcttgctacattctgagcccctttagtttgcttaggagaggaagcatcaaa
attcttatacattcattatttagcatgttcatcatgattacgattctgtcgaattgtgta
ttcatgacgatgagcaacccaccagcatggagtaaaaccgtggagtatgttttcactggt
atttacaccgtcgaggcaacagtcaaagtgttgtccagaggtttctgtgtggggtctttt
acattccttcgagatccgtggaattggctggatttcatggtgatcagcatggcatacgtc
actgagttcgttgaccttggcaacgtgtcagccctcaggacgtttcgtgttcttcgagcc
cttaaaacaattactgtgattcctggtttgaaaaccatcgtggccgctctgatccagtcg
gtgaagaaaatggtggacgtcatgattctgacggtgtttgctctggcggttttcgccctc
atcggcctccagctcttcatgggaaatctgcgacacaaatgtgtgctgtggccgatcgaa
acttcaaatgaaacttcattcgaatttttcaacaccacggcaacgttcggcgacacggtg
tcccacgacggcaccatgggcgtgaatcagacgacgtattccaacagcacctttgatttc
atggaatatattcaaaactccgataatcactattttgtggaaggaagcctcgatgctcta
ctctgtgggaacagctctgatgctggaatgtgccccgaaaaattcacctgcatgaaggcc
gggaggaaccccaactatggctacaccagctttgactcgtttggctgggccttcctcgcc
ctcttcagactcatgacccaggactactgggagaaccttttccagctgatcctgcgggca
gctggtaagacatacatgctgttctttgtggtgattatcttcctggggtccttctatctc
atcaacctcatcctggccgtggtagccatggcttacgacgagcagaatcaggcaacccag
cgagaggccatagagaaagaggaggagttccagcggctactagagcaactcaggaatcaa
gaccagcctctgaatcttgggagccgagccactttaaccagtaagaagtcgctgagtcat
cacacgtcgtctcagttgggggacgatgaactgagtcttgaatgtgacgacattgtcaag
gattgcaacgggagagtcattcccaacatactcatcagagcgcccaccatggttaagtct
gctgcagattatgaactcgaggaaaggtcactgggctctgtgcacagcatgatccatctg
gacggaccaggcctgacgcagaggacagcgagtgctatgaccgtgctcactgcagctgct
atggaagagttggaggatgcccagaggccgtgcccacccggctggtacaagtttgccgac
aagttcctgaagtgggactgctccccgtcctgggtggtctttaaaaactggatgtacgtc
gtggtgatggaccctttcgtcgacttgaccatcaccatctgcatcgtgctcaacaccctc
ttcatggccatggagcactcccccatgactccggagtttgagtacatgctcttagtgggg
aatctggttttcacagggatctttacagcggaaatggtcttcaagcttgttgcaatggat
ccttactattactttcaagttggctggaacatcttcgacagcatcattgtcacgctcagt
ctcgtggagttggggctggcgaatgtccaggggctctctgtcctccggtctttccgtctg
ctgcgtgtcttcaaactggccaaatcctggccaacgctcaacatgctgatcaagatcatc
ggaaactcagtgggcgctttagggaacctgactttggtgctggccatcattgtcttcatc
ttcgccgtggtgggcatgcagctgtttgggaagaactacaaggactgcgtgtgcaagatc
tccttagattgcgagctgccacgctggcacatgcacgacttcttccactcgtttctcatc
gtgttccgcatcctgtgcggggagtggatcgagaccatgtgggactgcatggaggtggca
ggagctgggatgtgtttggtcgtcttcatgctggtcatggtcatcggaaatcttgtggtg
ttgaacctcttcctggccttgctcctcagctcgttcagcggggacaacctctcagcggga
gacgaggacggggagatgaacaacctccagattgccatcggcaggatcacgcgaggcatc
gactggttcaaggcgttcgtcgtgcgaatcgttcagcagaatctcgacaaaaaacccagg
gggcccgaggagggtccgacggatggctcggagccaaaaacagaaggaatcgaaatgaac
cacttagacacctgtcaggatttcaaaatggcagacgggatatctaattgtctggttgaa
ggccggccttctggacttcctgtggacggagagctcagtctcaatgtgccaatcgcccag
ggagagtcggactttgaaaacctgggcgaggaggatgatgaagacgatgatgacgacgac
gatgctgatgacgctattgacttagagatgttagatgaagagagcaaccagaacacagaa
aactcagaagatgaatgtaacatgccaagaaaactgatgggtgctttgtgtgacggggat
tcttcgatatgcagcacagtggactaccaaccaccggagcctgaaccagaagaggtggaa
gaggaagagccggaaccagtggaaccagaggcctgcttcactgacgaatgtgtgagtcgc
tggccatgtctgactgtggacatcacccaaggtagaggcaagaagtggtggaacctccgc
agggcttgcttcactatcgtggagcacgactggtttgaaaccttcatcatcttcatgatc
ctgctcagcagcggggctctggcctttgaagacatatacatagaaagacgccgaaccatc
aaaattattctggagtatgctgacaaaattttcacctacgtctttgtcatcgagatgctc
cttaaatgggtggcatacggcttcaagacctacttcaccaacgcctggtgctggttagac
tttttcattgtagatatttccctgattagtttagttgccaactggatgggctactctgac
cttgggccaatcaaatccctcagaaccctcagggcgctgaggcccctccgagcattgtcc
agatttgaagggatgagggtggtggtgaacgctctcgttggggcgattccctccatcttc
aacgtgcttctggtgtgtttgatcttctggctcatcttcagcatcatgggagtaaacctg
ttcgccggcaagttctaccgctgcatcaacaccaccacagaggagcttttcccgctcacc
gaggtcaacaaccggagcgactgcatggccatggaggaagccacgcaggaggcgcgctgg
gtcaacgtcaaagtcaactacgacaacgtggggcaaggctacctgtcgctgcttcaagtg
gcaacgttcaaaggttggatggacatcatgtacgctgctgtggactcaagagaggtggaa
gagcaaccgtcttatgagatcaacctctacatgtacatctactttgtcatcttcatcatc
ttcggcgccttcttcacactcaatctcttcatcggcgtcattattgacaatttcaaccaa
caaaagaaaaagtttggagataaagacatatttatgactgaggaacagaagaaatactac
gaagccatgaagaagctcggttcaaagaagccacagaagccaattccacgtccgacaaac
ctaatccagggcgtggtgtttgacttcatcagtcagcagttctttgacatcttcatcatg
gtgctcatctgcctcaacatggtgagcatgatggtggagacggacaaccagagcccggag
aaggaggatttcctctttaaattgaacgtgtcgttcatcgtcgtcttcaccggggagtgt
ctgttgaagctcttcgccctgcggcagtacttcttcaccaacgggtggaacgtgtttgat
tttgttgtggtcatcttgtcaatagctggcacgatgctctctgacatcattgagaagtac
tttgtgtcgcccactctgttcagagtgatccgactggccagaataggcaggattctgcgt
cttattaaaggagccaagggcatccggacgcttctctttgctctgatgatgtcacttcct
gccctcttcaatattggtctcctactcttcctcatcatgttcatcttctccatatttggc
atgtcaaactttgcctatgtcaagaagggggctgggatcgatgacatttttaactttgag
acgtttggcggtagcatcatctgcctgtttgagatcacgacgtcggcgggctgggacggg
cttttgctcccgatgctgaacagcaactttccagactgtgatccaaactttgagaacccg
ggaaccgacgtaaagggtaactgtggcaacccgggcatggccatgattttcttctgcagc
tacatcatcgtctccttcttggtggtggtcaacatgtacatcgccatcatcttggagaac
ttcaacgtggcgcaggaggagagcggtgacgcgctctgcgaggacgacttcgaaatgttc
aacgagacgtgggagaagttcgacttagacgggactcagttcattgagtacagcaggctc
tccgatttttgtgacaccttgcaggagccgctgagggtggccaagcccaacctgcttcgc
ctgattgagatggacatgccgctggtcatcggggacaggatccactgcctggatgtcttg
ctggccgtcacaaagattgtcctgggagacacggtggagatggcggcaatgaaggagagc
atagaggcgaaattcatcctgaacaaccccacatcagactcctttgcaccgattaccaca
acgatgcgccacaaagaagagcagatggcggctgtggtcattcagagggcttaccgcacc
cacctgctaaaacgctgcatacgccacgccgctttcatgcaccgctctaagaggtcgggt
aaaaaggatggaagtggtgatccgccagaaagggaggggctgcttgcacggaagctggga
gtgctctatgggagcaacgcagagctggcggaggagatggagcaggccgctctggaaact
ctggcaaaccaagagcctctcactcctgagacagtgccacagcacacaggggcccagtgt
ggccccgaaccccctgagccacatgtcatggtcgtacctgtcgaaattactaatgaggtt
ttattacattcggcccccgaccgacagctcttccctgtagacgcaaacctgagagagtcc
atcgtataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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