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KEGG   Gambusia affinis (western mosquitofish): 122846935
Entry
122846935         CDS       T07758                                 
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
gaf  Gambusia affinis (western mosquitofish)
Pathway
gaf03320  PPAR signaling pathway
gaf04148  Efferocytosis
gaf04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:gaf00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    122846935 (rxraa)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:gaf03000]
    122846935 (rxraa)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:gaf03310]
    122846935 (rxraa)
Transcription factors [BR:gaf03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    122846935 (rxraa)
Nuclear receptors [BR:gaf03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   122846935 (rxraa)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1 tRNA_bind_3
Other DBs
NCBI-GeneID: 122846935
NCBI-ProteinID: XP_044000133
Position
LG17:19488397..19661692
AA seq 504 aa
METKPFLSLGFLKPQCSLAPPMQRGRSSEACSCFSGVCPLHQRRLSSDSSGQVTSSPLGS
PTSHRGMHPSLLSPTSMGPSGSLHSPISTLSSPMNGLTSPFSVISSPMGPHSMNSPGMGY
GPSISPQMFQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSGTALSLTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKRE
VLLHAAVQEERQRAKDKNENEVESTSCVNEDMPVEKILEAEEAVEPKTETYIETNLGMPS
NSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI
AVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP
DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggaaaccaaaccgttcctgtcattggggtttttgaagccccagtgctcattggctccc
cccatgcaacgaggtcgttcgtctgaggcgtgttcatgtttcagcggtgtttgtcccctc
catcagcgtcgcctatcctcagattcttcaggacaggtgacctcctcacctttaggctct
cctacttcccatcgtggaatgcatccctctttgctgagccccacctccatgggaccctct
ggctctctccattctcccatcagcaccctgagttcaccaatgaacggcctcacctcgccc
ttctcagtcattagctcacccatggggccgcactccatgaactcacctggcatgggctac
ggccccagcatcagcccacagatgtttcagttgaactctccaatgaactcggtcagcagc
acagaggacattaagcccccgctgggcctcaatggcgtgatgaaggtgcccgctcagccc
tcaggcacggctctgtcactcaccaaacacatctgcgccatctgcggcgaccgctcctca
ggaaaacactatggtgtctacagttgtgaaggctgcaagggtttcttcaaacgaaccgtt
cgcaaggacttgacctacacctgccgtgacaacaaggactgtgttatcgataagcgccag
aggaaccgctgtcaatactgccgctaccagaagtgcttggccatgggcatgaagagagaa
gttttgttacatgcagccgtccaggaggagcgccagcgagccaaggacaagaacgagaac
gaggtggagtccaccagctgcgtgaacgaggacatgcccgtggagaagatcctggaggcc
gaggaggcggtggagcccaaaaccgagacctacatcgagaccaacctgggcatgccgtcc
aactcgcccaacgacccagtgacaaatatctgtcaggcagcagacaagcagctttttact
ctggtggagtgggccaagaggattccccacttctcggagctgccactggacgaccaggtc
atcctgctacgagcaggttggaatgaactcctcattgcatcattttcgcaccgttccatc
gcagtaaaggacgggattctgttggcgacggggctgcacgtgcatcgcaacagcgcccat
agtgccggagtgggagccatctttgacagggtgctcacagagctggtgtcaaagatgaga
gacatgcagatggataagactgagctgggctgcctccgagccatcgtccttttcaaccca
gactctaaaggtttgtccaacccaggtgaggtggaagctctgagagagaaagtctacgcg
tctttagaggcttactgcaaacaaaaatacccagagcagccaggcaggttcgctaagctg
ttgctgcggttaccagcgctgcgctccatcggactcaagtgtttggagcaccttttcttc
ttcaagctgattggcgacacacccattgacaccttcctcatggagatgctagaagctcct
catcaaatgacataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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