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KEGG   Ficedula albicollis (collared flycatcher): 101807658
Entry
101807658         CDS       T02815                                 
Symbol
RXRA
Name
(RefSeq) retinoid X receptor alpha
  KO
K08524  retinoid X receptor alpha
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03320  PPAR signaling pathway
fab04148  Efferocytosis
fab04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:fab00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    101807658 (RXRA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:fab03000]
    101807658 (RXRA)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:fab03310]
    101807658 (RXRA)
Transcription factors [BR:fab03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    101807658 (RXRA)
Nuclear receptors [BR:fab03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   101807658 (RXRA)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 101807658
NCBI-ProteinID: XP_005055863
Position
17:8772430..8813020
AA seq 433 aa
MATPSLHPSIGPGIGSSLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPSTP
SLGFGTSSPQLNSPMNSVTSTEDIKPPLGLNGVLKVPAHPSGTMASFTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKRE
AVQEERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYIEANMGLTPSSPND
PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG
ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMLMDKTELGCLRAIVLFNPDSKGL
SNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG
DTPIDTFLMEMLE
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggccacgccgtccttgcacccgtccatcgggccgggcatcggctcctcgctgggctcg
ccgggccagctgcactcgcccatcagcaccctgagctcgcccatcaacggcatgggcccc
cccttctccgtcatcagctcccccatgggcccacactcgatgtctgtcccctccacgccc
agcctggggttcggcaccagcagcccgcagctcaactcgcccatgaactccgtcaccagc
acagaagacatcaagccacccctggggctcaacggagtcctcaaagtgccagcacacccc
tcagggacgatggcctccttcaccaagcacatatgtgccatctgcggggacagatcttcg
ggtaaacattacggggtttacagctgtgagggctgcaaagggttcttcaagcgcacggtg
aggaaggacctgacctacacgtgccgggacaacaaggactgcctgatcgacaagcgccag
cgcaaccgctgccagtactgccgctaccagaagtgtctggccatgggcatgaagagagaa
gccgtgcaggaggagaggcagcggggcaaggaccgcaacgagaacgaggtggagtccacg
agcagcgccaacgaggacatgcccgtggagaagatcctggaggctgagcttgctgtggag
ccaaagactgagacctacatcgaggcaaacatgggcctgacacccagctcgcccaacgac
cctgtgacaaacatctgccaggcagcagacaagcagctcttcaccctggtggagtgggcc
aagaggatcccccacttctccgagctgcccctggatgaccaggtcatcttgctcagagca
gggtggaacgagctgctgattgcctccttctcccaccgctccatcgccgtgaaggacggg
atcctgctggccacagggctgcacgtgcacaggaacagcgcccacagcgccggcgtgggg
gccatcttcgacagagtactgacagagctggtgtccaaaatgagggacatgctgatggac
aagacagagctgggctgcctgcgagccatcgtcctcttcaaccctgactccaaggggctc
tcgaacccggcggaggtggaggcgctgcgggagaaggtgtacgcgtcgctagaggcttac
tgcaaacacaaataccccgaccagcccggcaggttcgccaagctgctgctgcgcctcccg
gccctgcgctccatcggcctgaaatgcctggagcacctcttcttcttcaagctaataggc
gacacgcccatcgacaccttcttgatggagatgctggaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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