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KEGG   Etheostoma spectabile (orangethroat darter): 116704096
Entry
116704096         CDS       T08457                                 
Symbol
rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
esp  Etheostoma spectabile (orangethroat darter)
Pathway
esp03320  PPAR signaling pathway
esp04148  Efferocytosis
esp04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:esp00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    116704096 (rxra)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:esp03000]
    116704096 (rxra)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:esp03310]
    116704096 (rxra)
Transcription factors [BR:esp03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    116704096 (rxra)
Nuclear receptors [BR:esp03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   116704096 (rxra)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4
Other DBs
NCBI-GeneID: 116704096
NCBI-ProteinID: XP_032395224
Position
16:complement(2915646..3040002)
AA seq 504 aa
METKPFLSLGFLKPQCSLAPPMQRGRSAEACSCFSGMCPLHQRRLSSDSSGHLTSSPLGS
PTSHRGMHPSLLSPTSMGPSGSLHSPISTLSSPMNGLASPFSVISSPMGPHSMNSPGMGY
GPSVSPQMFQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSGTMLSLTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKRE
VLLHAAVQEERQRAKERNENEVESTSCANEDMPVEKILEAEQAVEPKTETYIETNLGVPS
NSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI
TIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP
DSKGLSNPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggaaaccaaaccgttcctgtcattggggttcctgaagccccagtgctcgttggctcct
cccatgcagcgaggccgctcggctgaggcttgttcctgtttcagcggcatgtgtcccctc
catcagcgccgcctatcctcagactcatcggggcacctgacgtcgtcgcccctgggctca
cccacatcccaccggggaatgcacccatctctgctcagtccgacgtccatggggccctcc
ggctctcttcactctcccatcagcacgctgagttcgcccatgaacggcctggcctcccct
ttctccgtcatcagctcgcctatgggtccccactccatgaactcacccggaatgggctac
ggccccagcgtcagcccccagatgttccagctgaactctccgatgaactctgtcagcagc
acggaggacattaagcccccgctgggcctcaacggcgtgatgaaggtgcccgcccagccc
tcaggcaccatgttgtcgctcaccaaacacatatgcgccatctgtggtgaccgctcctca
ggtaaacactacggagtatacagttgtgagggctgcaaaggttttttcaaaaggacggtg
cgcaaagacctgagctacacctgtcgcgacaacaaggactgtgtcattgacaagcgccag
aggaatcgctgccagtactgccgctaccagaagtgtttagccatgggcatgaagagagaa
gttttgttacatgcagccgttcaggaggagcgccagcgagccaaggagaggaatgagaac
gaggtggagtcgaccagctgcgccaacgaggacatgcccgtggagaagattctggaggcg
gagcaggcggtggaacccaaaaccgagacgtacatagagaccaaccttggggtgccatcc
aactcgcccaacgacccagtaacaaatatctgtcaggcggctgacaaacagctctttact
ttggtggagtgggccaagaggatcccccacttctctgagctgccactggacgaccaggtc
atccttctacgagcaggttggaatgaacttctcattgcatcattttcgcaccgttcaata
acgattaaagacgggatcctgttggcgaccgggctgcacgtccaccgcaacagcgcccat
agtgcgggagtgggagccatctttgacagagtgctcacagaactggtgtcaaagatgagg
gacatgcagatggataagacggaactggggtgccttcgagctatagtccttttcaaccca
gattctaaaggtctgtccaatccaggtgaggtagaagctctgagagaaaaagtgtacgcg
tctttagaggcctactgcaaacagaagtaccccgaccagcctggcagatttgccaaactg
ttgttacggttaccagcgctgcgctccatcggcctcaagtgtctggagcacttgttcttc
ttcaagctcatcggcgacacgcccatcgacaccttcctcatggagatgctagaagccccc
catcaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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