KEGG T05887: 114070626

Empidonax traillii (willow flycatcher): 114070626

Entry

114070626         CDS       T05887

Symbol

SCN4A

Name

(RefSeq) sodium channel protein type 4 subunit alpha isoform X1

K04837

voltage-gated sodium channel type IV alpha

Organism

etl Empidonax traillii (willow flycatcher)

Brite

KEGG Orthology (KO) [BR:etl00001]
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:etl04040]
    114070626 (SCN4A)
Ion channels [BR:etl04040]
Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   114070626 (SCN4A)

SSDB

Motif

Pfam:

Ion_trans Na_trans_assoc IQ_SCN5A_C PKD_channel IQ GPHH FUT8_N_cat

Other DBs

NCBI-GeneID:

114070626

NCBI-ProteinID:

XP_027763947

Position

Unknown

AA seq 1880 aa
MRQRVRKRNPSSFLFPGWARPARKQNARMASLPFIPGPENLRPFTPASLAAIEQRMAEAE
ALRIKRQQVEMPEEEEVKPSSDLEAGKNLPLIYGDPPPELIGTPLEDLDPFYKDKKTFIV
LNKGKSIFRFSATPALYMLGPFHPIRRGAIKVLIHSLFSMFIMITILTNCVFMTMSNPPA
WSKNVEYAFTGIYTFESLIKILSRGFCIDDFTFLRDPWNWLDFMVISMAYITEFVDLGNI
SALRTFRVLRALKTITVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGN
LRQKCVRWPPPNTTFLGDLELDNDTLVNSTFYDFVGDFAGNFTGNFTGNFTSNFTSNSTF
DFEAYISDEANFYFLEGALDALLCGNSSDAGKCPEGYQCMKAGRNPNYGYTSYDTFSWAF
LSLFRLMTQDFWENLFQLTLRSAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYAEQNDA
TLLEEQQKEEEFQQLMEQLKKQQEEQEKMLQDRRSSSDSLPSSVAQKEQKEHDSDVNSDQ
DKAKDCNGQVIPKITLQRSDTVIDFNPTFEPEKQDLNHLTVGNQDGPGLEKRVGSAISVI
SNAVEELEEAHQKCPPWWYKFAHTFLVWNCCYPWVKLKEFVKLVVMDPFVDLGITICIVL
NTLFMAMEHYPMTEEFENVLSVGNLVFTGIFTAEMVLKLIALDPYEYFQQGWNIFDSFIV
TLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYIECVCKISVDCTLPRWHMHDFFHSFLIVFRILCGEWIETMWDCM
EVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADSLAASDDDGEMNNLQIAIGRIT
RGIDFAKASLLTLLRQLWKGKKVAPEEEQEPSKRENSVLNHVDATQDTVKSGYLDGITGK
EYIFMDELDHMNFINNPSLTVQVPIASEESDLYEETSTQSETEDTTKNPLSSDNASSLCS
TVDYKPPAPEEEEVAEVAEESNEPEECFTEGCVKRFPCLYVDVTSEKGRRWWNIRKTCFR
IVEHDWFETFIVFMILLSSGALAFEDIYIEQRKVIRTILEYADKVFSYIFVIEMLLKWVA
YGFKVYFTNAWCWLDFLIVDVSLVSLTANWLGYSELGAIKSLRTLRALRPLRALSRFEGM
RVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYRCINTTTGELFDSSVVNNK
SGCMALLPTNEVRWVNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSREIEEQPQYE
INLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKL
GSKKPQKPIPRPSNKFQGKVFDFVTRQVFDITIMILICLNMVTMMVETDDQSELKTSVLY
KINLVFIVIFTGECVLKMFALRHYYFTVGWNIFDFVVVILSILGIVLSDIIEKYFVSPTL
FRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAY
VKKEAGIDDIFNFETFGNSIICLFQITTSAGWDGLLNPILNSGPPDCDPELENPGSSVKG
NCGNPSIGIFFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLCEDDFEMFYETWEK
FDPDATQFIAYSTLSDFVDTLQEPLKIPKPNKIKLITMDLPMVAGDKIHCLDILFALTKE
VLGDSGEMDALKASMEEKFMAANPSKVSYEPITTTLKRKHEEVCATKIQRAFRRYLLRRS
VKQASYMYRQSKDEDAPSEEAPEKEGLIATKMQEIYGNSGAEVETTPAIGLEPIPSSETR
DAPEEAKAWDKERVVKESLV

NT seq 5643 nt +upstreamnt +downstreamnt
atgcggcagcgggtcaggaagaggaatccatcatcgtttctgtttccaggctgggcgcgg
ccggcccggaagcagaatgcgaggatggccagcctgcccttcatcccgggccccgagaac
ctgcgccccttcaccccggcctcgctggccgccatcgagcagcgcatggccgaggccgag
gcgctccggataaagaggcagcaggtggagatgcccgaggaagaggaggtcaagcccagc
agtgacctggaagccggcaagaacctacccctcatctatggtgacccgccccccgagctc
atcgggaccccgctggaggacctggaccctttctacaaggacaagaagacattcatcgtc
ctcaacaaagggaagtccatcttccgcttctcggccacccctgccctctacatgctgggg
cccttccaccccatccgcagaggagccatcaaagtgctcatccattcattattcagcatg
ttcatcatgatcactattttaaccaactgcgtgtttatgaccatgagcaaccccccggcg
tggtccaagaatgtggaatacgccttcactgggatatacacctttgagtccctcatcaag
atcctgtcgagaggtttctgcatcgacgacttcacattcctgcgcgacccgtggaactgg
ctggacttcatggtcatctccatggcctacatcaccgagtttgtggacctggggaacatc
tctgctctcaggaccttccgcgtcctccgcgccttgaagaccatcaccgtcataccaggg
ctgaagaccatcgttggggctctgatccagtcggtgaagaagctctcggacgtcatgatc
ctcacggtgttctgcctgagcgtgttcgccctgatcggcctccagctcttcatggggaac
ctccggcagaagtgcgtgcggtggccgccccccaacaccaccttcctgggggacctggag
ctggacaatgacacgttggtcaactccacattttacgactttgtgggtgactttgccggc
aacttcaccggcaacttcaccggcaacttcaccagcaacttcaccagcaacagcaccttt
gacttcgaggcctacatcagtgatgaagccaatttctacttcctggagggagcccttgat
gccctgctctgcgggaacagcagcgatgctgggaagtgccccgaagggtaccagtgcatg
aaggcagggaggaaccccaactacggctacaccagctacgacaccttcagctgggctttc
ctgtccctcttccgcctcatgacacaggacttctgggagaacctcttccagctgacactg
cgttcagcagggaaaacctacatgatcttcttcgtggtggtcatcttccttggctccttc
tacctcatcaacctcatcctggcggtggtggcgatggcttacgctgagcagaacgacgcc
acgctgctggaggagcagcagaaggaggaggaattccagcagctcatggagcagctgaag
aagcagcaagaggagcaagagaagatgttgcaggacaggaggtccagcagcgattccctg
cccagcagcgtggcccagaaggagcagaaggagcacgactcggacgtcaacagcgaccag
gacaaggcaaaggactgcaacgggcaggtgatccccaagatcaccctgcagagatccgac
acggtgattgatttcaatccaacttttgagccggagaaacaggacctcaaccacctcact
gtgggcaaccaggacgggccaggactcgagaagagggtgggaagtgccatcagtgtcatc
tccaacgctgtggaagagctggaggaagctcaccagaagtgcccgccctggtggtacaaa
ttcgcccacactttcctggtctggaattgctgttatccgtgggtgaagctgaaggagttt
gtcaagctggtggtgatggaccccttcgtggacctgggcatcaccatctgcatcgtgctc
aacacgctcttcatggccatggagcactaccccatgacagaggagtttgagaacgtgctg
tctgtggggaacctggtcttcacagggatcttcacggcggagatggtcctgaagctcatt
gctctggatccctacgagtacttccagcagggctggaacatcttcgacagcttcatcgtc
accctgagcctggtggagctgggcttggccaacgtgcaagggctctccgtgctccgctcc
ttccgcttgctgagggtcttcaagctcgccaagtcctggcccaccctcaacatgctcatc
aagatcatcggcaactccgtgggcgccctggggaacctcacgctggtgctggccatcatc
gtcttcatcttcgccgtggtggggatgcagctcttcgggaagagctacatcgagtgcgtg
tgcaagatctccgtggactgcaccctgccccgctggcacatgcacgacttcttccactcc
ttcctcatcgtcttccgcatcctctgcggggagtggatcgagaccatgtgggactgcatg
gaggtggccggccagaccatgtgcctcatcgtcttcatgatggtcatggtcatcgggaac
ctcgtggtgctgaacctgttcttagctttgctgctgagctccttcagcgccgacagcctg
gcagcgtcggacgacgacggcgagatgaacaacctgcagatcgccatcggcaggatcacc
cgcggcatcgacttcgccaaggcctccctcctcacgctgctccggcaactctggaagggc
aagaaggtggccccagaggaggagcaggagcccagcaagagggagaactccgtgctgaat
cacgtggacgccacccaggacaccgtcaagtcggggtacctggatgggatcaccggcaaa
gagtatattttcatggacgagctggatcacatgaatttcatcaacaaccccagcctgacg
gtgcaagtccccatcgcctcggaggagtctgacctctacgaggagaccagcacccagtct
gaaaccgaggacaccaccaagaaccccctgagcagcgacaacgcctcgtccctgtgcagc
accgtggattacaaaccccccgcgcccgaggaggaggaggtggcagaggtggccgaggag
agcaacgagcccgaggagtgtttcaccgaaggctgcgtgaagaggtttccctgcctctac
gtggacgtcaccagcgagaaggggaggaggtggtggaacatccggaaaacctgcttccgc
atcgtggagcacgactggttcgagaccttcatcgtcttcatgatcctcctcagcagtggg
gcgctggcgttcgaggacatctacatcgagcagcggaaggtgatccgcaccatcctggaa
tatgccgacaaggtcttctcctacatcttcgtcatcgagatgctgctcaagtgggtggcc
tatggcttcaaggtgtacttcaccaatgcctggtgctggctggatttcctcattgttgat
gtttccctggtcagcctgacagcaaactggctgggatactccgagctgggagccatcaag
tccctgcggacgctgagggctctgagaccactgcgtgccctgtcccgatttgaaggcatg
agggtagtggtgaacgccttgctgggcgccatcccctccatcatgaacgtgctgctggtc
tgcctcatcttctggctgatattcagcatcatgggggtgaacctcttcgcggggaagttc
taccggtgcatcaacaccaccacgggggagctcttcgacagcagcgtggtgaacaacaag
agcggctgcatggccctcctgcccaccaacgaggtcagatgggtcaacgtcaaggtcaac
ttcgacaacgtgggcttgggatacctctccctgctgcaggtggcaaccttcaaaggctgg
atggatatcatgtacgctgctgtggactcacgcgagattgaagagcagccacagtatgag
atcaacctctacatgtacatctactttgtcatcttcatcatcttcggcgccttcttcacc
ctcaacctcttcatcggcgtcatcatcgacaacttcaaccagcagaagaaaaagtttgga
ggcaaagacatcttcatgacagaagagcagaagaaatactacaatgccatgaagaagctc
ggctccaagaaaccccagaagcccatccccaggccatcgaacaagttccaagggaaggtg
tttgacttcgttaccaggcaagtgttcgacataaccatcatgatcctgatttgcctcaac
atggtgaccatgatggtggaaacagatgatcagagcgagctcaaaacatctgtgctctac
aagataaacctggtcttcatcgtcatcttcaccggggagtgcgtgctcaagatgttcgcc
ctgcgtcactactacttcaccgttggctggaacatctttgacttcgtggtggtcatcctc
tccatcttaggtatcgtcctctccgacatcatagagaagtacttcgtgtcacccaccctc
ttcagggtcatcaggctggcgaggatcggccgtgtcctccggctgatccgaggggcaaaa
ggcatccggactctcctctttgctctgatgatgtccctgcccgccctgttcaacatcggc
ctcctgcttttcctcgtcatgttcatctactccatcttcgggatgtccaacttcgcctac
gtgaagaaggaggcggggatcgacgacatcttcaacttcgaaaccttcgggaacagcatc
atctgcctcttccagatcaccacgtcggccgggtgggatgggctcctcaacccaatcctc
aacagcgggcccccggactgcgaccctgagctggaaaacccgggaagttcggtgaaaggg
aactgtgggaacccctccattggcatcttcttcttctgcagctacatcatcatttccttt
ctcatcgtggtgaacatgtacatcgccatcatcctggagaacttcaacgtggccacggag
gagagcagcgagcccctctgcgaggatgacttcgagatgttttatgaaacctgggagaag
ttcgacccggacgccacccagttcatcgcctacagcaccttgtctgactttgtagacacc
ttgcaggagcccctgaaaattcccaagccaaacaagatcaaactaatcaccatggatctc
ccgatggttgccggggacaaaatccactgcctggacatcctctttgccctgactaaggaa
gtgctgggagactcgggagagatggacgccctgaaggccagcatggaggagaagttcatg
gccgcaaacccctcgaaggtctcctacgagcccatcaccaccaccctgaagaggaaacac
gaggaagtgtgtgccaccaaaatccagagggccttccggaggtacctgctgaggcgctcg
gtgaaacaggcatcctacatgtacaggcagagcaaggacgaggacgcgccgagcgaggaa
gcgcccgagaaggagggtctgattgccaccaaaatgcaggagatctatgggaacagtggg
gcagaggtggagacaacccctgccattggcctcgagcccattcccagctcagagacgcga
gatgctcccgaggaagcgaaagcttgggataaggagcgcgtggtgaaggagtcgctggtg
taa

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

Download RDF

DBGET integrated database retrieval system