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KEGG   Cynoglossus semilaevis (tongue sole): 103392061
Entry
103392061         CDS       T04866                                 
Name
(RefSeq) collagen alpha-2(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem04510  Focal adhesion
csem04512  ECM-receptor interaction
csem04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:csem00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    103392061
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    103392061
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:csem04147]
    103392061
   00536 Glycosaminoglycan binding proteins [BR:csem00536]
    103392061
Exosome [BR:csem04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   103392061
Glycosaminoglycan binding proteins [BR:csem00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   103392061
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   103392061
SSDB
Motif
Pfam: VWA Collagen VWA_2 Coagulin
Other DBs
NCBI-GeneID: 103392061
NCBI-ProteinID: XP_008326809
Position
16:complement(10254798..10267449)
AA seq 1033 aa
MGMFTGFIFLCMLQAAVPQHLEQEGPRPFNGRGDSPDPVQPPVCKTGIIDCPIKLFFTID
TSETIALQESPPGILVEQIKEFTKIFAQKLADEEYNGQIQISWSIGGLHFSQTQIVFSPF
TTRENFIRSLTGISYLGKGTYIDCALKNMTHLLTQHYSGTKAVLFSVVITDGHVTGSPCG
GIKAMAEGARERGIHVFSVAASRNIDHLGMREIASTPSELYRDDYIAVDIVNGRPKIKTE
SIERIIKAMKYQAYSQCNHQHRCFETPGIPGPRGPRGSKGAKGDRGQIGLKGDKGRQGDP
GIEGPIGRPGPKGETGFKGDKGETGAYGTKGTAGVPGRDGTDGQKGKMGHIGAPGCKGDP
GDKGAEGYHGEVGETGPPGDVGPKGDVGQPGKPGPFGPDGEVGAKGERGYPGNPGPPGDK
GPLGPDGLPGPKGEEGSRGASGPKGGPGPDGTKGEKGERGPLGIRGQPGVEGPKGVKGDQ
GLPGPRGQPGELGSPGVNGTRGDAGDPGPQGEMGTIGPKGDKGRQGFSYSGPRGPPGETG
DPGNKGPRGARGECGPKGEDGNKGAVGEEGVPGEHGETGERGPRGESGKDGDPGPVGDPG
LTDCDVMSYIRETCGCCDCEKLCGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSM
ASNPASPTGTRVGVVQFSHNGTFEAIRLDDPNIDSMSAFKMAVKNLQWIAGGTFTPSALK
FAYDTLIKDSKRARAKVSVVVITDGRFDPRDDDGLLQYLCADNNVVVNAIGVGDMFQKQQ
DDEILGSIACNKKERVTQMRNYIDLVAEDFIETMETVLCPEPVIVCPDLPCKSEPEVSPC
SERPVDLVFLLDGSERLGNENFRLVREFVQKVPVRLGLSRGKNDRMRARLALMEFGKENE
NHLAFPLTHNHTIITDGIEGLPYLDTSSSVGPAILHAIDNIVGKGNDRLTRRNAEISFVF
ITDGVTNSTNLEEAVSAMRGAQVVSTVITTGSDIDQEVLMKLAMGDQDAIFKGKDFSEML
GFSLFERFIRWVC
NT seq 3102 nt   +upstreamnt  +downstreamnt
atggggatgtttacaggcttcatttttctgtgcatgctccaagctgctgtcccacaacat
ctggaacaggaagggcccaggcccttcaatgggagaggtgacagtccagacccagttcaa
cctccagtttgtaagactggaataatcgactgtcccatcaagctgttcttcaccatcgac
acctccgagactattgccttacaagagtctcctcctgggattctggtggaacaaatcaaa
gagttcacgaagatctttgcccagaagctggctgatgaagagtacaacggccagatccag
atcagctggtccataggaggcctgcatttctcccagactcagattgtcttcagcccgttc
accaccagggagaacttcatcaggagcctgactgggatcagttacctgggaaaaggcacc
tacatcgactgtgctctgaaaaacatgacccaccttctgactcagcactactcaggaacc
aaggccgtccttttctctgtggtcatcactgacggccatgtgacaggaagcccctgtggg
ggcatcaaggccatggcagaaggagctcgtgagagaggaatccacgttttctccgtggca
gcgtccagaaacattgatcatttagggatgagagaaattgccagcactccttctgaactt
taccgggacgactacattgcggtggacatcgttaacgggcgtccaaaaataaaaactgaa
tccattgaacgcatcataaaagccatgaaataccaggcctactcacagtgtaatcatcag
catagatgcttcgagactcctgggattcctggaccaaggggacctcgaggttccaagggt
gcaaaaggagacagaggtcaaattggtctaaaaggtgataagggcaggcagggtgaccct
ggtatcgaaggtccaattggaagacctggtccaaagggtgaaactggtttcaaaggagat
aagggtgaaactggagcatatggaacaaagggtactgcaggagtacccggcagggatgga
actgacggccagaagggtaaaatgggtcatattggagctcctggctgcaaaggtgatcct
ggtgacaagggagctgaaggctaccatggagaagttggtgagactggaccgcctggtgac
gttggacctaagggagatgttggtcaacctgggaaacctgggccctttggtcctgatgga
gaagttggagcaaagggagaaagaggatatccaggaaatccagggccaccaggagataaa
ggacctttggggcctgatggtttacctggtccgaaaggcgaagagggaagtagaggagca
tctggaccaaagggcggaccaggacctgatgggacaaaaggagaaaagggggaacgaggt
ccactggggatcaggggacagccgggggtagaaggacccaagggtgtgaagggagaccaa
ggactaccaggaccgaggggtcagccaggggaattaggttccccgggtgtaaatggcacc
aggggcgatgcaggagatcctggaccacagggggagatgggaaccataggaccgaaggga
gacaagggtagacaaggattcagctactctgggccacgtggaccacctggagagacaggt
gatccaggaaacaaaggacccagaggagccagaggtgaatgtggccctaaaggagaggat
ggaaacaaaggagcagtaggagaggagggagtaccgggggagcacggtgaaacaggagag
agaggccccagaggagaatctggaaaagatggagatccggggcctgttggcgatcccggc
ctgactgactgtgatgtcatgtcttatatcagggaaacgtgtggttgttgtgactgcgag
aagctctgtggagctctggacattgtgtttgtcatcgacagctcagagagtgtgggcctg
acaaactttaccctggagaagaactttgtcattaacaccatcaatcgtctgggctccatg
gccagcaaccctgcatcaccgaccggcaccagagtcggtgttgtgcagttcagtcacaac
gggaccttcgaggccattcgtctggatgatcccaacatcgactccatgtctgcctttaaa
atggctgtgaagaatcttcagtggatcgccggaggcaccttcaccccatcggccctcaag
tttgcctacgacaccctcatcaaggacagcaagagggctcgagccaaagtgtccgtggtg
gtgatcacagacggtcgctttgacccacgtgatgacgacggcctgctgcagtacctttgt
gcggacaacaacgtggtggtgaatgcgatcggagtgggcgacatgtttcagaagcagcag
gacgacgagatcctggggtcgatagcgtgcaataagaaggaacgagtgactcagatgagg
aactacatcgacctggtggccgaggacttcatagagacgatggagactgtgctctgtcca
gaaccagtgattgtgtgccccgatctgccgtgcaaaagtgaacctgaagtatctccttgc
agtgaacgcccagtggatttggtattcctactggatggttctgagcgtcttgggaatgaa
aacttccgcttggtcagagagtttgtgcaaaaggtgccagtgcgtctgggtctctcccgg
ggcaagaatgaccgtatgcgagctcgcttagcactgatggagtttggcaaagagaatgaa
aaccacttagcctttcctctcacgcataaccacaccattatcactgacggcattgagggt
ctgccttatttggacacgtcatcaagtgtggggcctgcgattcttcacgccattgacaac
atcgtgggtaaaggaaacgatcgactgacgagacgcaatgcagagatttcctttgttttc
atcacagacggcgtcactaacagcaccaacttggaggaggcggtcagtgccatgcgcggg
gcacaggtcgtctccacggtgataaccacagggagtgacattgaccaggaagttttaatg
aagctggctatgggcgaccaggacgccatctttaaaggaaaagacttctctgaaatgttg
ggcttcagtctgtttgaacgcttcatccgatgggtgtgttaa

  All links  
Gene (32)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (40)   

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