[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
KEGG   Chiloscyllium plagiosum (whitespotted bambooshark): 122551433
Entry
122551433         CDS       T08871                                 
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
cpla  Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04510  Focal adhesion
cpla04512  ECM-receptor interaction
cpla04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cpla00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    122551433 (col6a1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    122551433 (col6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cpla04147]
    122551433 (col6a1)
   00536 Glycosaminoglycan binding proteins [BR:cpla00536]
    122551433 (col6a1)
Exosome [BR:cpla04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   122551433 (col6a1)
Glycosaminoglycan binding proteins [BR:cpla00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   122551433 (col6a1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   122551433 (col6a1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3
Other DBs
NCBI-GeneID: 122551433
NCBI-ProteinID: XP_043549266
Position
7:27705190..27763056
AA seq 1009 aa
MALKILFLLLEIFSSWNFLLAQPDNGYHSDCPVDLYFVLDTSESVALRVQPYGSLVDRVK
TFTANFVEKLENWYYRCDQTLQWNAGALHYSDVVKKIHPLSFMSRDEKAAMIANVRAVDY
IGKGTFTDCAIRDGAEELLLGGSHHRENKYMIVVTDGHPIEGYKEPCGGLDSAASDAKNQ
GIKIFSVAIMPDHLEARLNLIASSPKYRRNFTATIPNDVELNNTIDSILQDIYGEVEPVC
CSFECHALRGSPGLPGDPGEKGSEGRRGSHGPIGPPGPLGRPGDIGPAGHPGMKGDKGER
GPKGDRGHKGSKGAKGFPGRDGKDGQKGEPGYSGLPGCAGSSGLPGPPGLQGLKGDPGPF
GSKGQKGEPGLDGEPGRLGNIGRPGDKGNPGPRGSNGDLGERGDEGPPGDDGDVGEEGPP
GEPGLPGPQGPRGDRGPKGDVGSNGQPGHEGPPGVSGEPGEPGRPGPMGFKGDMGRPGQE
GLRGPRGSKGYPGDPGPMGEMGDPGSSGNGTRGPPGLPGIPGIQGVPGSNGTKGFPGPKG
DDGEPGDPGADNDVPGEKGRKGAKGYRGPEGEPGPIGPPGLPGPSECEILDIIKRMCSCC
ECKCGPIDLLFVVDSSESIGDQNFALAKQFIITVIERLSRDEKIRFDGKESNIGVVQYSH
AGTEELVSMTDPNINTLPELKVAIKNLQWIAGGTFTGTALDWSKTAFKGSLNQVRVALVL
TDGRSDISRDPKSLSSLCNEANVVSVGVSDIFRNQPAAESLRQIACESAPTPGLSLQRDN
FMELLEDAFLENVTQFICREKKCPDYSCPIQFNVSTDIALMLDSSTSVGSKNFETSKTFV
KRLAERFLNAKRARGTTVRTSVLQYSKSEVIEVPFSDNYTEVADRIERMEFMNDATDVGR
ALEGVNTHFQRSGRNVRKKLLLFTDGRSQGDLVNNIEKQAQAAQARNIEVYVIAVGDQVH
ENNLRALVSGTAIDYDVDRGSRHLFRVKDYPSLLKGVFYQTVTKQMSLD
NT seq 3030 nt   +upstreamnt  +downstreamnt
atggctttgaaaatattatttctcctgctggagattttctcctcgtggaactttttactg
gctcaaccggacaacggatatcactcagattgccctgttgacctgtactttgtgctggac
acatctgagagtgtcgctttaagagttcagccctacggctccctggtcgatcgcgtcaag
acgttcactgcaaatttcgtcgaaaagctggaaaactggtattaccggtgtgaccagaca
ctgcagtggaacgctggagctctacactacagtgatgtggtgaagaagatccatcctctc
agtttcatgagccgcgatgaaaaggcagcgatgattgcgaacgtcagagcagtggattac
attggcaaaggcacgttcacagactgcgccatacgggacggagctgaggagcttctactc
ggtggctcacatcaccgagagaacaagtacatgattgtggtaacagatgggcatccaatt
gaggggtacaaggagccgtgcggaggcctggacagtgcagcatccgatgcaaagaatcaa
gggataaagatattttcagtggccatcatgccagatcacctggaagcaagactgaatctg
attgcaagtagtcccaaatatcgacgaaatttcacagcaaccattcccaacgacgtggaa
ctgaacaataccattgatagcatccttcaagatatttatggtgaagtggaaccagtgtgt
tgctcctttgagtgccatgcattaagaggatcacctgggctgcctggagatccaggagaa
aagggctcagaaggacgtcgaggttctcacggtcctattggtccacccggtcccttgggt
agacccggtgacattggaccagctggtcatccgggtatgaagggtgacaaaggagagcgt
ggtccaaagggtgacagaggacacaaaggatccaagggtgcaaagggattccctggaaga
gatgggaaagacggtcagaagggtgaacctggctactctggtctgccaggctgtgctgga
tcttcaggacttcctggaccacctggactccagggcctcaagggtgatccaggcccattt
ggaagtaaaggacagaagggtgaacccggcttagatggggaaccaggacgacttggaaat
attggcagaccaggcgataagggaaatccaggccccagaggaagtaacggagatctcggg
gagcgaggtgatgaaggacctccgggagatgatggtgacgttggcgaggagggtcctcca
ggtgaaccagggctgcctggtcctcaaggcccaagaggagacaggggacctaagggggac
gtcggatccaatggacagccagggcacgagggtcctcccggagttagcggtgaaccaggt
gaacctggccgaccaggacctatgggatttaagggtgacatgggacgtccaggacaagag
ggactgaggggacccagaggttcaaagggctacccaggagacccaggcccaatgggagaa
atgggcgatcctggtagctcaggcaacgggaccaggggcccgcctggattacctggtatt
cctggtattcaaggagtcccaggatctaatggaacaaaaggcttcccaggtccgaagggt
gatgatggtgagcccggagaccctggcgctgataacgatgttccaggtgagaaaggtcgc
aaaggagccaagggttacagaggtccagagggggaaccgggacccattggacccccggga
cttcctgggccttcggaatgtgaaatattggacatcatcaaacgcatgtgctcttgctgt
gagtgcaagtgtgggcccatcgacctcctgtttgtagtggacagctcagagagtatcgga
gaccaaaatttcgctctagccaagcagttcataattacggtgattgagaggctgagcaga
gatgagaaaatcaggtttgatggcaaggagtccaacattggggtcgtccagtacagtcac
gcagggactgaggagttggtctcaatgactgatcccaacattaacactctgccggaacta
aaagttgcaatcaagaacctccagtggattgcaggaggtaccttcactggaactgcgctg
gactggtcaaagacagccttcaaggggtcacttaaccaagtccgggtcgccctggtcctg
actgacgggcggtcagacatttcgagagaccccaagtcgctgtcgtcactctgcaatgaa
gccaacgttgtctcggtcggtgtgagcgacatcttccgcaaccagccagctgccgaaagc
ctgaggcagatcgcctgtgagtcggctccaacccctgggctcagcttgcaacgagacaac
ttcatggagctgctggaggacgccttccttgagaacgtcactcagttcatctgcagagaa
aagaagtgcccagactactcctgtccaattcagttcaacgtgtcaacagacatcgccctc
atgctcgacagctccaccagcgtggggagcaagaacttcgagacgagcaagacctttgtc
aagcggctggccgagcgcttcctcaatgccaagcgtgcccgtgggaccacagtgcgcacg
tcagtgcttcaatacagcaaatccgaggtcatcgaggtgccgttctctgacaactacact
gaggtggccgatcggatcgagcggatggagttcatgaatgatgccactgatgtgggccgc
gccctggagggtgtcaacacccacttccagcgcagcggccggaacgtcaggaagaagctg
ctcttgttcactgacggcaggtcccagggagacctggtgaacaacatagaaaagcaggcg
caagctgcccaagcccgtaacattgaagtttacgtcatagcagtaggcgatcaggtccac
gagaacaatctgcgggccttggtatcaggcacagccattgactatgatgtagatcgcggc
tcccgccatcttttccgggtgaaggactaccccagccttttgaaaggcgtgttttaccaa
acagtcaccaaacaaatgtcacttgattaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (8)   

Download RDF
DBGET integrated database retrieval system