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KEGG   Colossoma macropomum (tambaqui): 118819959
Entry
118819959         CDS       T09004                                 
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
cmao  Colossoma macropomum (tambaqui)
Pathway
cmao03320  PPAR signaling pathway
cmao04148  Efferocytosis
cmao04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:cmao00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    118819959 (rxraa)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cmao03000]
    118819959 (rxraa)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:cmao03310]
    118819959 (rxraa)
Transcription factors [BR:cmao03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    118819959 (rxraa)
Nuclear receptors [BR:cmao03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   118819959 (rxraa)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 118819959
NCBI-ProteinID: XP_036443894
Position
Unknown
AA seq 514 aa
MDPFYLDIHMGFLKPQCSLAPPPQRGRSGEACSCFSGMCPLHQRRLSTDMATPGSYQHHC
KEIRVDSSGQMTSSPLSSPTSHRAMHPPLLSPTSIGASGSLHSPISTLSSPMNGLGSPFS
VISSPMGPHSMASPGMGYGPSVSPQLNSPMNSVSSSEDIKPPLGLNGVMKVPAQPSGTPI
SLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQ
YCRYQKCLAMGMKREAVQEERQRARDRNENEVESTSSANEDMPVEKILEAELAVEPKTET
YIETNLGMPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNEL
LIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELG
CLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI
GLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1545 nt   +upstreamnt  +downstreamnt
atggaccctttctaccttgacatccacatggggttcctgaagccccagtgctctctggcg
ccgccccctcagagaggccgttcaggggaggcatgctcctgtttcagcggcatgtgccct
ctccatcagcgcagactgtccacagacatggcgacccctggttcctatcagcaccactgt
aaagaaatcagagtcgactcgtcaggtcagatgacctcctctcccctgagctcacccacc
tctcaccgtgcgatgcatccgcccctgctcagcccgacctccatcggggcctcggggtcc
ctccactcgcccatcagcaccctcagctcgcccatgaacggactgggttcacccttctct
gtcatcagttcgcccatgggcccgcactccatggcctcacctgggatgggctacggcccc
agcgttagcccacagttaaattcgccgatgaactccgtcagtagctctgaagacatcaag
cctccactgggcctaaacggcgtgatgaaggtgccagctcagccctcaggcacaccaatc
tccctcaccaaacacatctgtgccatctgcggagaccgctcctctggtaaacactatggc
gtgtacagctgtgagggctgcaagggcttctttaagagaactgtgcggaaagacctgacc
tacacctgcagagacaacaaagactgcgtcatcgacaagcgccagcgcaatcgctgccaa
tactgccgctatcagaagtgtctggccatgggcatgaagagagaagctgtccaggaggag
cgccagcgagccagagaccgaaacgagaacgaggtggagtccaccagcagcgccaatgag
gacatgcctgtggagaagatcctggaggctgaacttgctgtcgagcccaagactgaaacc
tacattgagaccaacctgggcatgccctccaactcacctaatgatccagtcactaatatc
tgccaggcagcagacaaacagctcttcactctggtggagtgggccaaaaggatcccacac
ttctctgaactgcccctggatgaccaggtcatcttactgcgagcaggctggaatgagctg
ctcatcgcatcgttctcgcaccgctccatagccgtgaaggacggcattctgctagccaca
gggctccacgtgcacaggaacagtgcccacagcgcaggcgtgggagccatattcgacagg
gtgctcacggagttggtgtcgaagatgagggacatgcagatggataaaactgagctgggc
tgcctgcgggccatagtgctttttaatccagactccaaagggctgtcaaacccaggggag
gtggaggctctgagggagaaagtgtatgcctctctggaggcctactgcaagcataaatac
cctgaacagcctggcaggtttgctaagctgttactgcggctgcctgcgctccgttccatc
ggactcaagtgtctggagcacttgttctttttcaagctcataggggacacgcccatcgac
accttcctcatggagatgctggaggcgccccaccaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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