[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
KEGG   Cyclopterus lumpus (lumpfish): 117746972
Entry
117746972         CDS       T09199                                 
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04510  Focal adhesion
clum04512  ECM-receptor interaction
clum04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:clum00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117746972 (col6a1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117746972 (col6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:clum04147]
    117746972 (col6a1)
   00536 Glycosaminoglycan binding proteins [BR:clum00536]
    117746972 (col6a1)
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117746972 (col6a1)
Glycosaminoglycan binding proteins [BR:clum00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117746972 (col6a1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   117746972 (col6a1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3
Other DBs
NCBI-GeneID: 117746972
NCBI-ProteinID: XP_034412229
Position
17:6196851..6217551
AA seq 1008 aa
METLGLLAMLCALMAGAQTQNQKERFADCPVDLFFVLDTSESVALRKKPPKFYIDQVIHF
TNNFIDELREFRHRCDRTLTWNSGALHYSDEVKLIRGLSDMRTDRKALKDDITRIDFIGK
GTYTDCAIKEGLGQLLNGGTHYQENKYIVVVTDGHPITGYKEPCGGVQEAANEAKQHGVK
VFAVAILPDQEETRLSLIATDQTYRQNFTAADDTRSTKMGTIRTIIEMITNETKDACCSF
DCIAPGGDAGPKGDIGSNGETGRPGMPGEKGDVGKMGNLGDTGPVGYTGMKGDRGGKGGK
GDRGHKGYKGDKGQRGNDGIDGRKGKDGFAGLPGCKGSPGSDGLQGESGPKGDSGPYGLK
GGKGDPGKDGEPGRPGNYGPLGPQGERGPRGNNGDKGERGDDGEPGPDGNRGERGQVGEK
GEQGSRGNRGPRGDGGEPGPRGEQGREGSAGPNGDPGQSGRAGSPGYRGDEGPPGPEGPK
GPRGIKGAPGDRGLIGERGEDGVAGNGTVGCLGFQGYPGSRGGSGEPGGKGTPGPKGDDG
DAGDPGPDNNEPGPPGTKGAKGHRGPEGNPGPIGPPGPPGTDECEILDIIMKLCSCCECK
CAALDLAFIVDSSESIGSTNFALAKDFIITVIDRLTKDQQLKFASNHSGLSVVQYSGSQA
QEKIRLDSTGLIAFKEKVRNMKWLAEATYTGEALDFALTNTLSMMTHENKVVIVLTDGRS
DRSRDKVPINVLCGKGLLVGGLGVKDYSGREPNHEQLGELVCKSDAKPGFAFVLDNFAEL
LDDSFLQNLTSRICQNKTCPDYKCPLSFSESAEILVMMDSSASVGQKNFATTKTFVSRLA
ERFLTAERKRGATVKMGVGQYSRSSRMEQAPTTNLTLLTYHTEEAAFQNDGTNVLEAMEF
AVKTLPGRGDASGDRRKLVLFSDGRSQDVTEALLEKRVREVADAGVEVFVIAVGSQVNEV
NLRTLVSKGRRDDISYAQRHLFRVSDYNSLLHGVFHQTVSRRVSTNKL
NT seq 3027 nt   +upstreamnt  +downstreamnt
atggagacgcttggtctcctcgcgatgctgtgcgccttaatggctggagcgcaaacgcag
aaccaaaaagaaaggtttgcggattgtccagttgaccttttctttgtgctggatacatct
gagagtgtcgccctcagaaagaaacctcccaaattttatattgaccaggtcatacacttc
accaacaacttcatagatgaactcagggaatttcgccaccgatgcgaccgcaccctgacg
tggaactcgggagctctgcactacagtgacgaagtcaaactcattcgcgggctgagcgac
atgaggacagatcgcaaggccctgaaggatgacattacgcgcatcgacttcatcggcaag
ggcacgtataccgactgtgccatcaaggagggtcttggtcagctgctcaatgggggcacg
cactaccaagagaacaagtacatcgtggtggtgaccgacggtcatcccattactggttac
aaagagccatgtggaggcgtgcaggaggctgctaacgaagccaagcaacatggagtcaaa
gtgttcgctgttgccatcttacctgaccaggaggagaccaggctgtcactcattgccaca
gaccagacctacagacagaacttcactgctgcagacgacaccagatccacaaagatggga
accattcgaaccatcatagaaatgatcacaaacgagacaaaggatgcgtgttgctcgttc
gactgcattgctccaggaggggatgcgggaccaaagggagacattggctcaaatggagaa
acaggtagaccaggcatgcccggagagaaaggagatgtcggcaaaatgggcaaccttgga
gatactggtcctgttggttacactggaatgaagggcgaccgcggtggcaaaggaggaaag
ggtgacagaggacacaaaggctacaagggagacaaaggtcaaaggggaaatgatggcatt
gacggacgcaaggggaaagatggtttcgctggtcttcccggctgtaaaggatctcccgga
tcagacggcctgcagggagagtctggaccaaagggagactctggtccttatggactgaaa
ggaggaaaaggagatcctggaaaagacggagaaccgggaaggcctggaaactatggccca
ctgggacctcagggtgagcggggccctcgcggaaacaacggggacaaaggagagcgcggc
gatgacggcgaaccgggaccggatggaaatcgcggcgagagaggacaagttggagagaag
ggcgagcaaggttcccgtggaaacagaggtccaagaggagacgggggggagccagggccc
cgtggagagcaggggagggagggctcagctggccccaacggagaccccggccagtctggc
agggccgggtctcctggctacagaggagatgaaggcccacctggaccagaaggacccaaa
gggccgagaggaatcaaaggagctccgggagacagaggcctgatcggggagaggggagaa
gatggtgtagcaggaaacggaactgtgggttgtcttggtttccagggttatcctgggtcc
cgcggaggctctggtgagccgggtggcaaaggaactcctggacccaaaggagatgacgga
gacgccggagatccaggccccgataacaacgaaccaggacctccaggaaccaaaggggcc
aaaggtcacagaggaccagaaggcaatccgggacctattgggcctcctggaccaccagga
accgatgaatgtgaaattctggatatcatcatgaagctctgctcttgttgtgagtgtaag
tgtgcggctctggacctggcgttcattgtggacagctcagagagtatcggttccacaaac
tttgctctcgccaaagactttatcatcacagtcatagacagactgaccaaagaccagcag
ctcaagtttgcaagcaatcactccgggttgagcgtagtccagtacagtggatcgcaggcc
caagaaaaaatcagactggattccaccggcctcatcgcatttaaagagaaagtgaggaat
atgaaatggctggccgaggccacatacacaggcgaggccctggatttcgctctgaccaac
acactcagcatgatgacccatgagaacaaagtcgttatcgttctaacagacggacgttcc
gatagatccagggacaaggttcccatcaacgtactctgtggtaaaggtctcctggtgggt
ggtttgggagtgaaggactactcgggccgtgagcccaaccatgagcagctcggggaattg
gtttgtaagagtgacgccaagccaggctttgcctttgtcctggacaactttgccgagctg
ctagatgactctttcctgcagaacctcacatccagaatctgtcaaaataagacgtgccca
gactacaaatgtcccctgtctttctcggaaagtgctgagattttggtgatgatggacagc
tcggcaagcgtgggccagaagaacttcgccactaccaagaccttcgtcagccgcttggcc
gagcgtttcctgaccgccgagaggaagaggggggccactgtcaaaatgggtgtgggccag
tacagccgaagctcccgcatggagcaggcgccgactaccaatttaacccttctaacctat
cacactgaagaggcggccttccaaaacgacggcaccaacgtgttagaggccatggaattt
gccgtgaagaccttacctggtcgtggagacgcgtcaggggacaggaggaagctggtgctg
ttctctgacggcaggtctcaggacgtcactgaggccttgctggagaagcgtgtccgtgag
gtggcggacgccggggtggaggtcttcgtcatcgccgttggcagccaagtcaatgaggtc
aacctgcgcacgctggtgagcaagggacggcgggacgacatcagctacgcccagcgccac
ctgttccgggtctcagactacaactctctgcttcacggggtcttccaccaaacagtctcc
cgccgggtgtccaccaacaagctttag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (8)   

Download RDF
DBGET integrated database retrieval system