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KEGG   Ciona intestinalis (yellow sea squirt): 778746
Entry
778746            CDS       T01056                                 
Symbol
rxr
Name
(RefSeq) nuclear receptor
  KO
K08524  retinoid X receptor alpha
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:cin00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    778746 (rxr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cin03000]
    778746 (rxr)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:cin03310]
    778746 (rxr)
Transcription factors [BR:cin03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    778746 (rxr)
Nuclear receptors [BR:cin03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   778746 (rxr)
SSDB
Motif
Pfam: Hormone_recep zf-C4
Other DBs
NCBI-GeneID: 778746
NCBI-ProteinID: NP_001071809
Ensembl: ENSCING00000001836
UniProt: Q4H2U9
Position
9:complement(1526978..1533201)
AA seq 507 aa
MSLPTTGNGLSSSQSSAPAMFTQSNQRVLQPPALSIMGFRGMPPMPHHPQFVMNSQGGMI
QLPHGLMVPGSEAPTVPTSNPAMASRFSADRLPVGGINGSISPQQIPDSSSGSQAGGNPM
SFGNITVKQEMGQGSMVPLQYPQLSSTENMGTNMFSVSSSGVPLSKHICAVCGDRASGKH
YGVYSCEGCKGFFKRTVRKYLTYTCRDDKDCIIDKRQRNRCQYCRYQKCITMGMKKEAVQ
EERQKNREQDECHGDGGHDDMPVDKILQAELASDPKMEELINMQEPIDTSVCKAADHQLF
TLVEWAKRVPMFGTLPLDDQVTLLRAGWNELLIASFSHRSIEIPDGIILASGLRVYRQSA
HSAGVGAIFDRVLTELIAKMRDMSMDRTELGCLRAIVLFNPDAKDLTDPAYIETLREKVY
ASLEVYCKSKYPDQAGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGNTPIDQFLMDKLAP
HDTEATSSPSTQATQNNDINLAGVANL
NT seq 1524 nt   +upstreamnt  +downstreamnt
atgtcattgccaactacggggaatggtttgtcatcttcccaatccagcgcaccggcaatg
tttacccagagtaaccaacgtgtcttacaacctcctgctttatctattatggggttcagg
gggatgcccccaatgccccaccacccccaattcgtcatgaactcacaaggaggaatgatc
cagttaccccatgggttaatggtccccggttctgaggcccctactgttccaacatcaaat
ccagccatggcgtcccgattttcagcagatagattgccggtaggtggaatcaatggttct
atttcaccccaacagattccagacagcagttcaggaagtcaagctggtgggaacccaatg
tcttttggaaacataactgtcaaacaagaaatgggtcaagggtctatggttccactccag
tacccacaactttcatcaacagaaaacatgggaacaaatatgttttctgtgtccagtagt
ggagttccattgtcaaaacatatctgtgcagtgtgtggagatcgcgcatctgggaagcat
tatggagtatatagctgtgaagggtgcaaaggattttttaaaagaactgttcgaaagtat
ttgacgtacacttgtagagatgacaaggattgtattattgataagcggcaaagaaaccgc
tgtcagtattgtagataccagaagtgtataacgatgggcatgaaaaaagaagctgtccag
gaggaacgacagaagaatcgtgagcaagatgagtgtcatggtgatggaggacatgatgac
atgcctgtagataaaatacttcaagcagaattggcatcagatccaaaaatggaggaacta
ataaacatgcaggagccgatagacacaagcgtgtgcaaagccgctgatcatcaactgttt
acattggtagagtgggccaagcgagtgcctatgtttggtacattgccattggatgaccag
gtcacgctactgagagcaggatggaatgaacttctgatcgcttcattcagtcatcggagc
atcgagatacctgatggcatcattcttgcttccggactccgagtttatcggcagagtgct
cactctgcgggggtgggagcaatatttgatcgagttttgacagaattaattgctaagatg
agagacatgtcaatggatagaacggagcttggatgtcttagagcgattgttctgtttaac
ccagatgcaaaagacttgacagatccagcttacattgaaacattaagagaaaaggtttat
gcatcgctggaggtttattgcaaatctaaatatcctgaccaagctggaagatttgcaaag
cttcttcttcgactcccagccctgcgctctatcggcctcaagtgtcttgagcatcttttc
tttttcaagttgatcggcaacactccaattgatcagttcctcatggataagctggctccc
catgacacggaagctacaagctccccatccacacaagccacacagaacaatgacattaac
ctcgctggcgtcgccaacctgtga

  All links  
Gene (45)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (58)   

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