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KEGG   Clupea harengus (Atlantic herring): 105912052
Entry
105912052         CDS       T09045                                 
Symbol
rxrab
Name
(RefSeq) retinoic acid receptor RXR-alpha-B isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03320  PPAR signaling pathway
char04148  Efferocytosis
char04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:char00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    105912052 (rxrab)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:char03000]
    105912052 (rxrab)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:char03310]
    105912052 (rxrab)
Transcription factors [BR:char03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    105912052 (rxrab)
Nuclear receptors [BR:char03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   105912052 (rxrab)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1
Other DBs
NCBI-GeneID: 105912052
NCBI-ProteinID: XP_031427011
Ensembl: ENSCHAG00000003649
UniProt: A0A6P8FU77
Position
7:complement(30903131..30967901)
AA seq 466 aa
METKPFLSLDSSGQFSPSLLSSSTSHRGLGHPLRPPLHPSLHPSLHPSMGGSGPLHSPLN
GLGGPYPIISSAMGHHSHTHTHTHTHSHSPSSMAFSPQLSSPMNSEDIKPPLGLNGMMKS
PSHASCAALSLSLALSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRENK
HCQIDKRQRNRCQYCRYHKCLAMGMKREAVQEERQRGRERSDGEAESSGVNEEMPVEKIL
EAEVAVEPKTDTYTAGSPGAPSTPPNDPVTNICQAADRQLFTLVEWAKRIPHFSELALDD
QVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSK
MRDMQVDKSELGCLRAIVLFNPDSKGLSNPADIEVLRERVYASLEAYCKQKYPEQPGRFA
KLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPHRMT
NT seq 1401 nt   +upstreamnt  +downstreamnt
atggaaaccaaaccgtttctgtctttagattcttcgggtcagttctctccgtccctcctg
agctcgtccacgtcccaccggggtctgggtcaccccctgcgcccccccctgcacccctcg
ctgcacccctccctgcacccctccatgggggggtcgggcccgctgcactcccccctcaac
ggcctggggggcccctaccccatcatcagctccgccatgggccaccactcacacacacac
acacacacacacacacactcacactcgcccagcagcatggccttcagcccgcagctgagt
tcccctatgaactctgaggacatcaagcctcctctgggtctgaacggcatgatgaagtct
cccagccacgcgtcctgtgccgccctgtccctctccctggccctctccaaacacatctgt
gccatctgtggagacaggtcttcaggtaaacactatggcgtgtacagttgtgagggctgt
aagggcttcttcaagcggaccgtgcggaaggacctgacctacacgtgccgggagaacaag
cactgccagatcgacaagcgccaacgcaaccgctgccagtactgccgctaccacaagtgc
ctcgccatggggatgaagagagaagcggttcaggaggagcgtcagcgggggagggagagg
agtgacggggaggcggagtccagcggggtgaatgaggagatgccggtagagaagattcta
gaagcagaggtggccgtcgagcccaagactgacacctacacagcaggcagcccgggagcg
ccttcaacaccgcccaacgacccggtgaccaacatctgccaagcagcggacaggcagctc
ttcaccctggtggagtgggcgaagaggatcccacacttctcagagctggccctggacgac
caggtcatcctcctcagagcaggttggaatgagctcctcatcgcctctttctcccatcgc
tccatcgcggtgaaggacggcatcctgctggccacggggctccacgtccacaggaacagc
gcccacagcgcgggcgtgggcgccatctttgacagggtactgactgagctggtgtccaag
atgagagacatgcaggtggacaagtcagagctgggctgcctgagagccatcgtcctgttt
aacccagattcgaagggtctgtctaacccggcggacatcgaggtgctgagggagagagtg
tacgcttcactggaggcctactgcaagcagaagtaccccgagcagccggggaggtttgcg
aagctgctgctgcgtctgccggcgctgcgctccatcggactcaagtgtctggagcacctg
ttcttcttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgctggag
acgccgcaccggatgacgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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