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KEGG   Clupea harengus (Atlantic herring): 105898925
Entry
105898925         CDS       T09045                                 
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D isoform X1
  KO
K04851  voltage-dependent calcium channel L type alpha-1D
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04010  MAPK signaling pathway
char04020  Calcium signaling pathway
char04218  Cellular senescence
char04260  Cardiac muscle contraction
char04261  Adrenergic signaling in cardiomyocytes
char04270  Vascular smooth muscle contraction
char04530  Tight junction
char04912  GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:char04040]
    105898925
Ion channels [BR:char04040]
 Voltage-gated cation channels
  Calcium channel, voltage-gated (Cav)
   105898925
SSDB
Motif
Pfam: Ion_trans CAC1F_C Ca_chan_IQ GPHH PKD_channel PFF1_TM
Other DBs
NCBI-GeneID: 105898925
NCBI-ProteinID: XP_031422175
Ensembl: ENSCHAG00000021153
UniProt: A0A6P8FET7
Position
4:13506356..13571297
AA seq 2168 aa
MAFIRGIRGPCRGANYASSTRAPPSGDDPPLWHTSPALADPPPLVHSGSLSWEAAIDAAR
SAQGGAPPTMRSHSTAGSAPVGSLSQRKRQQYAKSRSKGSTNNNRPPRALFCLTLNNPIR
RACINLVEWKPFDIFILLSIFANCVALAVYVPFPEDDSNSINHDLETVEYAFLIIFTIET
FLKIIAYGLVMHQNSYVRNGWNMLDFVIVIVGLFSVILEVITKEGDVAGPGGGKPGGFDV
KALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGK
MHATCYLLSTGALAEDEPTPCAVSGHGRNCPVNTTACKEGWHGPNNGITNFDNFLFAMLT
VFQCITMEGWTDVLYWMNDAMGFELPWIYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKA
KARGDFQKLREKQQLEEDLKGYLDWIAQAEDIDPENEEDGQQEGKRNRVTLADLTQKKKG
KFGWFSQSTETHASMPISETESVNTDNPNGEDDKAHCCGPLCQKITKSKFSRHWRRWNRF
CRRKCRLAVKSTTFYWLVILLVFLNTLTISSEHYNQPDWLTHVQNVANKVLLAMFTCEML
IKMYSLGLQAYFVSLFNRFDCFVVCGGIVETILVELAIMSPLGISVLRCVRLLRIFKVTR
HWASLSNLVASLLNSMKSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDETVTKRSTFDNF
PQALLTVFQILTGEDWNTVMYDGIMAYGGPSSSGMVVCIYFIILFICGNYILLNVFLAIA
VDNLADAESLNTAQREKDEEIQRRKSIRSDSICRKEDEKKEAKDGETKVAVEEPVEEEKG
PTSDSGEEDEEVEVPEVPAGPRPQRLTDLNLKEKIQPIPEGSAFFIFSKTNPIRVACHRL
INHQIFTNLILVFIMLSSVSLAAEDPIRNFSARNIILGYFDYAFTAIFTVEILLKMTAFG
AFLHKGAFCRNYFNLLDLLVVGVSLVSFGIESSAISVVKILRVLRVLRPLRAINRAKGLK
HVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYRCTDEAKSSPEECQGTYILY
SIGETALPVIKHRVWHNSDFNFDNVLMAMMALFTVSTFEGWPSLLYKAIDSNKENMGPIY
NYRVETSIFFIIYIIIIAFFMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKA
RPVRRYIPKNRHQYRFWYVVNSAGFEYIMFVLIILNTLCLAIQHQGQSGLFNYVMDILNM
VFTGVFTVEMILKLIAFKPRNYFADAWNTFDALIVVGSVVDIAITEMNSTQDSARISITF
FRLFRVMRLVKLLSRGEGIRTLLWTFVKSFQALPYVALLIAMLFFIYAVIGMQVFGKIAM
VDGTQINRNNNFQTFPQAVLLLFRCATGEAWQDIMLACLPGKLCDSDSDDNPGGEKTCGS
SFAIIYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAK
GRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTA
LKIKTEGNLDEANEELRAVIKKIWKRTSMKLLDQVVPPAGDDEITVGKFYATFLIQDYFR
KFKRRKEQGLVGLHPARLNTTIALKAGLRTLHDIGPEIRRAISCDLQDEDANVEEEDEIY
RRNGGLFGNHLNHVNGDNRDLTHQTNVTQRPLQVPPLPCNAHADPTQLLQDDGPLYANVN
ASFCHKSSNANLNNANVPSLPAVTNGGHNQHSEHAAATRLSSLGSYLNLRSDGDPLRRVN
SRRARYYETYIRSDSGASCYPTIRREVPVAGDGSDEERGSGEYYSGEDFQEDEIMLAGDR
RRSYREYHDTVSHLDPETTRGYHHPESFFDDDEQPIYQECRRSPIRRLLSSSPQTPHRPA
FSFECLRRQSSQDETPLSPACNHRTALPLHLMQHQVMAVAGLDASRVRLSPTRSIRSWAT
PPTTPGAYTPLIQVDWHGGPPSASSTPDTARGSSWYTPQLPARMSRSTPHSRSFTHRPLR
SSHSSHSPSHLQIPLDFHSRHSQKRGSADSLVEAVLISEGLGKFAKDPKFVAATKQEIAD
ACEMTIDEMESAASDLLNGGMPDADAAASDNPDGRRPRSLHYYSDEEVEASGKHEEDLTD
EMICITTL
NT seq 6507 nt   +upstreamnt  +downstreamnt
atggcgttcatacgcgggatacgtggaccctgccgaggggcaaattatgccagcagcacc
agagcccctccctctggtgacgatccacccctttggcacacaagccccgccctcgccgac
ccaccacccctggtccactctggaagcctatcctgggaggctgcgatcgatgctgctcgc
agtgcccagggtggcgccccaccaactatgagaagccactccacagcgggctcggctccc
gtggggtccctctcccagcgcaagcgacagcagtatgccaagagcaggagcaaaggtagc
accaacaacaaccgccccccgagggccctcttctgcctcaccctcaacaaccccatacgc
agggcctgcattaacctggtggagtggaaaccttttgatatctttatattactgtctatt
tttgccaactgtgtggccttagctgtttacgtcccctttcccgaagatgactccaactca
atcaatcatgacctggaaacagtagaatatgccttcctcatcatttttacaatagagact
tttctgaagatcatagcctacggacttgtaatgcaccagaactcatacgtcagaaacggc
tggaacatgctggactttgtcatagttatagtggggttgtttagtgtgatactggaggtg
atcaccaaagagggcgacgtggcgggtccaggcggggggaagccaggggggtttgacgtg
aaggcgctacgagctttccgggtgctccgtcccctccgtctcgtctcgggagtgccaagc
ctgcaggtggtcctgaactccatcatcaaggccatggtccccctcctgcacatcgccctc
ctcgtgctcttcgtcatcatcatctacgccatcatcggcctggagctcttcatcggcaag
atgcacgccacctgctacctgctcagcacaggtgccctggcggaagacgagccgactccg
tgtgccgtgtcgggtcacgggcgcaactgcccggtcaacaccaccgcgtgcaaagaaggc
tggcacggccccaacaacggcatcaccaactttgacaacttcctgttcgccatgctcacc
gtgttccagtgcatcaccatggagggctggacagatgtgctgtactggatgaacgatgcc
atgggctttgagctcccgtggatctactttgttagcctggtcatttttgggtcatttttt
gtccttaatctggttctgggagtgctgagtggagagttctccaaggagcgagaaaaggcc
aaggcgcgcggagacttccagaagctgcgggagaagcagcagctggaggaggacctgaag
ggctacttggactggatcgctcaggccgaggacatcgaccccgagaatgaggaggacggg
cagcaggagggcaaacgcaacagggtgactttggctgacctcactcaaaagaagaaaggg
aagttcggctggttcagccagtcgaccgagacacatgcgagcatgcccattagcgagacg
gagtcggtgaatacagataacccaaacggggaggatgacaaggcccactgctgtggacca
ctttgtcaaaaaattacaaaatccaaattcagtcggcactggcgccgctggaacaggttc
tgccgcaggaagtgtcgcctggcggtgaaatccaccaccttctactggctggtgatcctc
ctggtgttcctcaacacgctgaccatctcctctgagcactacaaccagccagactggctc
acgcacgtgcagaatgtggccaacaaggtgctgcttgccatgttcacgtgtgagatgctg
ataaagatgtacagcctgggcctgcaggcctacttcgtgtcgctcttcaaccgcttcgac
tgcttcgtggtgtgcgggggcatcgtggagaccatcctggtggagctggcgatcatgtcg
cccctcggcatctccgtgctccgctgcgtgcgcctgctacgcatattcaaggtcacacgt
cactgggcgtccctgagtaacctggtggcgtctctgttgaactccatgaagtccatcgcc
tccctgctgcttctgctcttcctcttcatcatcatcttctccctgctcggcatgcagctc
ttcggcggcaagttcaacttcgacgagactgtgaccaagaggagcacgtttgacaacttc
cctcaggcgctgctcactgtctttcagatattgacaggcgaggactggaacacagtcatg
tatgatgggatcatggcctatggcgggccttcctcctctggcatggtggtctgcatctac
ttcatcatcctcttcatctgtggaaactacatcctcctgaatgtcttcttggctatcgcc
gttgacaacctggcagatgccgagagcctgaacacggctcagagagaaaaggatgaggag
atccagaggaggaagagcatcaggagtgacagtatatgcagaaaagaagatgaaaagaaa
gaagctaaggatggggaaactaaggttgcagtagaggagcctgtagaggaggagaaaggt
cccacctcagactcaggtgaggaggatgaggaagtggaggtgcctgaggttcccgccggg
ccacgccctcagagactgacagacctcaacctcaaggagaagattcagcccatccctgag
ggaagtgccttcttcatcttcagcaagactaaccccatccgagtggcctgtcaccggctg
atcaaccatcagatcttcaccaacctcatcctcgtcttcatcatgctcagctctgtctcc
ctggccgcagaggaccccatccgcaacttctccgcccgcaacatcattcttggttatttt
gactatgcattcacggctatctttacggtagagatcctgctcaagatgactgcgtttggg
gctttcctccataaaggggccttctgcaggaactacttcaacctgctggacctgctggtc
gtcggggtgtcactagtgtcctttggcattgagtcatcagccatctcggtggtgaagatc
ctgcgtgtgcttcgagtgctgcggcccctcagagccatcaacagagccaagggcctcaag
catgtggtgcagtgcgtgtttgtggccatccgcaccattggcaacatcatgatcgtcacc
acgctcctccagttcatgtttgcctgcattggtgtgcagctctttaagggaaagttctac
cgctgcacagacgaagccaaatcaagtccagaggaatgccaaggcacatacatcctgtat
agcattggtgaaacagcgctgcctgtcatcaaacatcgggtgtggcacaacagcgacttc
aactttgataatgtgctcatggccatgatggccctcttcactgtctcaacgtttgaaggc
tggccatcgctcctgtacaaggccattgactccaacaaagaaaacatgggccccatttat
aactatcgtgtagagacctccatcttcttcatcatctacatcatcatcatcgccttcttc
atgatgaacatctttgtgggtttcgtcatcgtcaccttccaggaacagggggagaaagaa
tacaagaactgtgagctggacaaaaaccagcggcagtgtgtagagtatgccctgaaggca
cgtccggtgaggaggtacatccctaagaaccgccaccagtacaggttctggtacgtagtg
aactcagcgggctttgagtacatcatgttcgtactcatcatcctcaacacgctctgcctg
gccatacagcaccaaggccagtctggtctcttcaactatgtgatggacatcctcaacatg
gtgttcactggagtcttcaccgtggagatgatcctcaaattgattgccttcaaaccaagg
aattatttcgccgatgcatggaacacgtttgatgccttaattgttgttggtagcgtcgtt
gacattgcaatcacagagatgaatagcacgcaggacagcgcccgaatctccatcacgttt
ttccgcctctttcgggtcatgcgattggtcaagctgctgagtcgaggcgagggcattcga
acgctcctgtggaccttcgtcaagtcctttcaggcccttccctatgtagctctgttgata
gccatgctcttcttcatctatgctgtcattggcatgcaggtgtttggaaaaatcgccatg
gtcgacggcacgcagatcaatcggaacaacaacttccagacttttccccaggccgtgctg
ctgctcttcaggtgtgccacgggagaagcgtggcaggacatcatgttggcgtgcttgcca
gggaagctgtgtgactcggactccgacgacaaccccggtggggagaagacgtgtggcagt
agctttgccatcatctacttcatcagtttctacatgctctgcgccttcctgatcataaat
ttgtttgttgctgttattatggataattttgattaccttacccgtgattggtccattctg
ggtcctcatcacttggatgagttcaagaggatctggtcggagtatgaccctgaagccaag
ggcagaataaagcatctggatgttgtgactcttctgcgacggattcagccacctctaggg
tttggcaagttgtgtcctcatcgagtagcctgtaagaggctggttgccatgaacatgccc
ttgaacagtgatgggacggtcatgttcaatgccaccctattcgctctggttaggactgct
ctgaagataaaaacagaagggaacctggatgaagccaatgaggagttgagggcagtcata
aagaagatctggaaaaggacgagcatgaagctgttggatcaagtagttcctcctgctggt
gatgacgagataacggtggggaagttctatgccaccttcttgatacaggactacttcagg
aaattcaagagacgcaaagagcaagggcttgtgggactccatcctgccagactcaacacc
accatcgcactgaaggctggcctgcgcacactgcatgatattgggccagagattcgccga
gccatatcatgtgacctgcaggatgaagatgcaaatgtggaagaagaggatgaaatttac
aggaggaatggaggcctgttcggcaaccacctcaatcacgtgaatggggacaaccgcgat
ttgacccaccaaaccaacgtcacccagcgacctttgcaggtgccgccgctcccctgcaat
gcccacgcagatcccacacagttgctgcaggatgacggcccgctctatgccaatgtcaat
gccagcttctgccacaagtcctctaacgccaacctcaacaatgccaacgtgccctctctg
cctgccgtcaccaatggggggcacaaccaacactccgagcatgcggctgccacacggctc
tcctccctgggctcctacctcaacctcaggagtgacggtgaccctcttaggagggttaac
tccagaagagcacgctactatgaaacctatattaggtctgactcaggggccagctgttac
cccactatccgcagagaggtgcccgtggctggggacgggagtgacgaggagcggggctct
ggagagtactacagcggcgaggacttccaggaggatgaaatcatgctggcgggtgacagg
aggaggtcctaccgggagtatcacgacactgtgagccatttggacccggagacgaccagg
ggctatcaccaccccgagagtttctttgacgacgacgagcagcccatctaccaggagtgc
cggaggtcacccatacgccggctgctctcctcctccccccagactcctcaccggccggcc
ttcagctttgagtgtctgcgcaggcagagcagtcaggacgagacgccgctgtctcctgct
tgtaaccaccgcactgcactacctcttcatctgatgcagcatcaggtgatggcagtggct
ggactggacgccagccgggtcaggctctctccgacccgctccatccgctcctgggccacg
ccgcccaccacccccggcgcctacacgccactcatccaggtggactggcacggcgggccc
cccagtgccagtagcacccccgacacggcccgcgggagctcctggtacacgccgcagctg
ccggcgcgcatgtcccgctccactccccactcgcggagcttcacgcaccggcccctccgc
tcctcgcactcctcacactcccccagccacctgcagatccccctggacttccacagcagg
cacagccagaagagaggcagcgcagacagtctggtggaggcggtactgatctcagagggt
ctgggaaagtttgcgaaggatcccaagttcgtggcagcgaccaagcaggagatcgccgat
gcgtgcgagatgaccatcgacgagatggagagcgccgccagcgacctgctgaatggcggc
atgccggacgcggacgccgccgcctcggacaaccccgacgggcgccgcccgcgcagcctg
cactactacagcgatgaggaggtggaggccagcgggaagcacgaggaggacctgacagac
gaaatgatatgcatcacgacgctatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (8)   
   KEGG PATHWAY (8)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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