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KEGG   Carassius gibelio (silver crucian carp): 127985863
Entry
127985863         CDS       T08819                                 
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03320  PPAR signaling pathway
cgib04148  Efferocytosis
cgib04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    127985863
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cgib03000]
    127985863
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:cgib03310]
    127985863
Transcription factors [BR:cgib03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    127985863
Nuclear receptors [BR:cgib03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   127985863
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 127985863
NCBI-ProteinID: XP_052444016
Position
B21:complement(19292988..19436418)
AA seq 524 aa
MDPFCLDMHMGFLKPQCSIPPPPQRGRAEACTCFSGMCALHQRRLSTDLLIPRTPQCDDP
FRRTPFLKYKDSSGQVTASPLSSPTSHRGMHPSLLSPTSLGPSGSLHSPISSLNSPMNGL
GSPFSVISSPMGPHSMASPGMGYGPSISPQLNSPMNSVSSSEDIKPPLGINGVMKVPAQP
SGTPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCIIDKRQ
RNRCQYCRYQKCLAMGMKREVLLHTAVQEERQRAKERNENEVESTSSANEDMPVEKILEA
ELAVEPKTETYIETNVPMPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQV
ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR
DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKL
LLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1575 nt   +upstreamnt  +downstreamnt
atggatcccttctgccttgatatgcacatggggttcctgaaaccccagtgctcgatacca
ccgccacctcagagaggacgagcagaagcatgcacgtgtttcagcggaatgtgtgccctt
catcaacgcaggctttctacagacttgttaataccaaggaccccccaatgtgatgatccc
tttagacggactcccttcctaaaatataaagactcctcgggacaggtgacagcctctcct
cttagctcacccacgtcccaccgggggatgcatccgtcactgctgagcccgacttcattg
ggcccctcggggtctctgcactcccccatcagctctctgaactcacccatgaacggcctt
ggctctcccttttctgtcatcagctcgcccatggggccacattccatggcgtcacccggg
atgggctacggccccagcatcagcccacagttgaattcgcccatgaactctgtcagcagc
tcagaagatatcaagccgcccctgggcatcaacggtgtgatgaaggtgccagcccagccc
tcgggcacccctctttccctcaccaaacacatctgtgccatctgtggcgaccgctcctca
ggtaaacactacggtgtgtacagctgcgaggggtgcaagggtttcttcaagaggactgtg
cgtaaggacctgacctacacttgtcgagacagcaaggactgtattatcgacaaacgccag
cgcaaccgctgccagtactgccgctatcagaagtgtttggccatgggcatgaagagagaa
gtattattacatacagccgtccaggaggagcgccagcgagccaaggaacgcaacgagaac
gaggtggagtcgaccagcagtgcgaacgaagacatgcctgtggagaagatcctggaggcg
gagcttgctgtggagcccaaaacggagacttacattgaaaccaatgtaccgatgccctca
aattcacccaatgatccagtcacgaacatctgtcaggctgcagacaagcagctcttcact
ctcgtggaatgggccaagaggatcccgcatttttccgagctcccgctggacgaccaggtc
attcttctacgagcaggatggaatgagctcctcattgcgtcattttcacaccgttcaata
gcagtgaaagatgggatactgttggccacaggactgcacgtgcaccggaacagcgcccac
agtgccggagtaggggccatatttgacagggtgctgacggagttggtgtcaaagatgaga
gacatgcagatggataaaacagagctaggatgccttcgagccatcgtcctcttcaatcca
gactccaaaggcctgtcaaacccaggtgaggtggaggcgctgagagagaaggtctatgcc
tctctggaagcctactgcaaacagaaataccctgaacaacctggaaggtttgctaagctg
ttgctgcggctccctgccctgcgttcaattggactgaagtgtttggagcatctgttcttc
ttcaagctcataggggacactcccatcgataccttcctcatggagatgctagaggcgccc
caccaaatgacataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (9)   
   RefSeq(pep) (9)   
DNA sequence (9)   
   RefSeq(nuc) (9)   
Protein domain (4)   
   Pfam (4)   
All databases (32)   

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