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KEGG   Coregonus clupeaformis (lake whitefish): 121582449
Entry
121582449         CDS       T08357                                 
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320  PPAR signaling pathway
cclu04148  Efferocytosis
cclu04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    121582449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cclu03000]
    121582449
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:cclu03310]
    121582449
Transcription factors [BR:cclu03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    121582449
Nuclear receptors [BR:cclu03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   121582449
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 121582449
NCBI-ProteinID: XP_041754171
Position
15:40077960..40229206
AA seq 535 aa
METKPFLSLGFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHQRRISTGNTQRHLHIPSPS
APSWQTQHLGRHLYEINSSGQVTSSPLGSPTSHRGMHPSLLSPSSMGPSGSLHSPISTLS
SPMNGLGSPFSVISSPMGPHSMSSPCMGYGPSVSPQMFQLNSQMNSVSSSEDIKPPLGLN
GVMKVPAQPSQGCTPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCR
DNKDCLIDKRQRNRCQYCRYQKCLACGMKREVLLHSAVQEERQRAKERSENEVESTSSVN
EDMPVEKVLEAELAVEPKTETYIETNLGMPSNSPNDPVTNICQAADKQLFTLVEWAKRIP
HFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFD
RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQK
YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1608 nt   +upstreamnt  +downstreamnt
atggaaaccaaacctttcttgtcattggggttcctgaagccccagtgctcgctggctccg
cccccccagcgaggacgctcgggggaggcctgctcctgtttcaccggcatgtgtcacctc
caccagcgccggatatctacaggtaacactcaacgccatctccacatcccctcgccatct
gccccgtcatggcagactcagcacctgggaagacacctttatgaaataaattcatcaggt
caggtgacctcgtctcccctgggctctcccacatcccaccggggcatgcacccatccctg
ctcagcccgtcctcaatgggaccctcgggctccctgcactctcccatcagcaccctgagt
tctcccatgaacggtctgggctcgccattctctgtcatcagctcccccatgggcccacac
tccatgtcctcaccttgcatgggctacggccccagtgtcagcccccagatgttccagctg
aactcccagatgaactcggtcagcagctcggaggacatcaagcccccgctgggtctcaac
ggggtgatgaaggtgcccgcccagccctcacaagggtgcacgcccctctccctcaccaaa
catatctgtgccatctgcggggaccgctcgtcaggtaaacactatggagtgtatagctgc
gagggctgtaaaggcttcttcaagagaacagtgcggaaggacctgacctatacctgccgc
gacaacaaggactgtctgatcgacaagcgccagcgcaaccgctgtcagtactgccgctac
cagaaatgtctggcctgtggaatgaagagagaagttttgttacactcagccgtccaggag
gagcgccagcgggccaaagaacgcagtgagaacgaggtggagtccaccagcagcgtcaac
gaggacatgcctgtggagaaggtcctcgaggcagagctcgctgtggaacccaagacagag
acctacatcgagaccaacctgggcatgccatccaactcgcccaacgacccggtgactaac
atctgccaagcagccgacaagcagctcttcacgctggtggagtgggccaagaggatcccc
cacttctctgagctgcccctggacgaccaggtcatcctcctacgagcagggtggaacgag
ctcctcatcgcatccttctcgcaccgttcgatagcggtgaaagatgggatcctcctggca
acagggctacacgtccatcgtaacagcgcccacagtgctggagtgggagccatatttgac
agagtgctcacagaactggtgtccaagatgagagacatgcagatggacaagacagagctg
ggttgccttcgggccattgtcctcttcaacccagactctaaaggcttgtcaaacccaggc
gaggtggaggctttgagagagaaggtctacgcctctctggaggcctactgcaaacagaaa
tacccagatcagcctggcaggtttgccaagttgttgctgcggttaccagccctgcgctcc
attggtctgaagtgtctggagcacctgttctttttcaagctcatcggggacacgcccatc
gacaccttcctcatggagatgctagaggcgccccaccaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

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