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KEGG   Coregonus clupeaformis (lake whitefish): 121580529
Entry
121580529         CDS       T08357                                 
Name
(RefSeq) collagen alpha-2(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510  Focal adhesion
cclu04512  ECM-receptor interaction
cclu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121580529
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121580529
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121580529
   00536 Glycosaminoglycan binding proteins [BR:cclu00536]
    121580529
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   121580529
Glycosaminoglycan binding proteins [BR:cclu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121580529
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   121580529
SSDB
Motif
Pfam: VWA Collagen VWA_2
Other DBs
NCBI-GeneID: 121580529
NCBI-ProteinID: XP_041751387
Position
Unknown
AA seq 1014 aa
MMMMRSEFITLCFLFGATAHAQAVPECNRKHECPIDVYFAIDTSETIALQEPPPGSLVES
IKIFTERFAERLEDADYKGLVQIRWQLGGLHFSQRQQVFSRIQAKDAFIQGVRGVRYLGK
GTYIDCALANMTQEITRSPSDPGALRFAVIITDGHVTGNPCGGVKVTAERARDEGIRMFV
VAATKNVDETGLREIANSPANVYRRDFLAVDLSGNNAVIQQDTIDRIIKTMTHLAYQECY
QVKCLETEGPPGPKGHSGHKGVKGDNGDPGPKGERGRQGDPGIEGHIGQPGVKGEIGLKG
EKGEIGAEGMKGVVGLAGRNGTDGQKGKIGRIGAPGCKGDPGDRGPDGHPGDVGDGGLPG
TDGEKGDSGRPGRAGPLGPVGDAGPKGERGSPGSPGFPGAKGTPGTVGGPGDKGELGRRG
DFGLKGDQGPDGVKGDRGEAGPEGLRGLPGEVGNKGTKGDNGLPGPRGPPGSSGEAGKNG
TRGDPGDAGPRGDPGQPGPKGDVGRAGFSYPGPRGPTGDRGEKGGPGPRGGRGDCGPKGG
PGGKGTPGEEGEPGPQGEPGLRGPRGVGGRDGDQGPEGDPGLTECDVMNYIRETCGCCDC
EKRCGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSMAKDPNSETGTRVGVVQYSH
SGTFQAIRLNDSKIDSLSAFKDAVKRLEWIAGGTWTPSALKYAYDHLIKDSRRAKANVTV
VVITDGRFDPRDDDSLLTYLCSDPSVDVSAIGIGDMFDQIEENESLKSIACQRDGRVLGM
RRFADLVAEEFIDKIEAVLCPDPVIVCPDLPCKTEPAVASCVQRPVDLVFMLDGSERMGV
ENHRRAKEFIENVARRLTLANGESDDRNARVALLQYGGQSEQRVEFSLTHNLTVIADSLA
GMSYMDSASSLGSAIIHAVNNLVMSQGTRLARRNAELSFVFITDGITAGNSLEEGVSAMR
RAEGIPTVIAMGTDTDQEVLRKVALGDTLAIFRGEDYATLGKPTFFERFIRWVC
NT seq 3045 nt   +upstreamnt  +downstreamnt
atgatgatgatgaggtcagagttcatcacgctgtgcttcctgtttggagccacagcacac
gcccaggctgtcccagaatgcaacaggaaacatgagtgtcctatagacgtgtactttgcg
atcgacacgtctgagaccatcgccctgcaagaacctccccctggatcactggtggagagc
atcaagatatttacagagcgttttgcagagcgtctggaggatgcagactataaaggactg
gtccagatcagatggcagttaggaggactacacttctcccagagacaacaggtcttcagc
cgtatacaggccaaggacgctttcatacagggggtgaggggtgtccggtatcttggtaag
ggaacctacatcgactgcgctctcgccaacatgacacaggaaattacacgctcgccttcc
gaccccggagcgctgcgattcgctgtcatcatcaccgatggtcacgtgacaggaaacccc
tgcggcggggtgaaggtgacggcagagcgggcgcgcgacgagggcatcagaatgtttgtg
gtcgcagcaacgaagaacgtggacgagacgggtctgagggagatcgctaactctccggcc
aacgtctacagaagagacttcctggctgtcgatctcagtggcaacaacgctgttatacag
caagacactatagaccgcatcatcaagaccatgacccatctggcctatcaggagtgctac
caggtgaagtgtctggagacagaaggacctcctggtcccaagggacacagtggacacaag
ggggtcaaaggagacaacggcgaccccggtcctaaaggtgagaggggaagacagggcgac
cccggcatcgagggtcacatcggtcaaccaggagtcaagggggaaatcggtctgaagggt
gaaaagggggagataggagctgaggggatgaagggtgtggtcggcctcgctggacgcaac
gggacagacggacagaagggtaagatcggacgcatcggcgctcccggctgcaaaggagat
ccaggagacaggggtcctgatggtcacccaggagacgtgggcgatggtggacttcctgga
acagacggagagaagggagattccggtcgaccaggaagagcaggccccctcggcccagtg
ggagacgctggacctaagggtgagagagggagtcctggctcgcctggcttccctggagcc
aaaggaacaccaggaactgttggaggcccaggagacaagggagaactggggagaagagga
gactttgggctgaagggggatcagggaccagatggtgttaaaggagacaggggagaggcg
gggcctgaggggctgagaggactaccaggggaagtaggaaacaaaggaaccaagggagac
aacggactcccggggccgcgcggcccccccggctcttcaggagaggcagggaagaacggt
acccgtggcgaccccggtgatgctggaccgagaggagaccccggccaaccaggaccaaag
ggcgacgtgggaagagctggcttcagttacccaggaccaagaggaccaacgggagaccgt
ggggagaagggtggtccagggcccaggggaggcagaggagactgtggccccaagggaggg
ccaggaggaaaggggacccctggagaggagggagaaccagggcctcagggagaacctgga
ctcagaggaccaagaggagtgggtggacgagacggagatcaaggtcctgagggagaccct
ggcctcacagaatgtgatgtcatgaactacatcagagagacctgcggctgctgtgactgt
gagaagcggtgtggggcgctggacatcgtgttcgtgattgacagctcagagtcggtgggt
ctgaccaacttcaccctggagaagaactttgtcatcaacaccatcaacagactgggatct
atggccaaggaccccaactcagagacagggaccagagtgggcgtggttcagtacagtcat
agcggaaccttccaggccatccggctcaacgactccaagatcgactccctgtctgccttc
aaggatgcagtgaagcgtctggagtggatagccggcgggacgtggaccccgtcagcgctg
aagtacgcctacgaccacctgatcaaggacagccgccgagctaaagccaacgtcaccgtg
gtggtcatcacagacggacggttcgaccccagggacgacgactcactgctcacatacctc
tgcagtgaccccagtgtggatgtgagtgccatcggtataggagacatgtttgaccagata
gaggagaatgagagtctgaagagtatagcctgtcagagagacgggagggtgctggggatg
agacgcttcgctgatctggtggcggaggagttcatcgacaagatagaggccgtgctctgc
ccagaccctgtgatcgtgtgccctgaccttccctgtaaaactgagccagcagtggccagc
tgtgttcagcgccccgtggaccttgtgttcatgctggacgggtcagagaggatgggagtg
gagaaccaccgccgcgccaaggagttcatcgagaacgtggctcgccgcctcaccctggcc
aacggcgaatcagacgacaggaatgcccgcgtggccctgctgcagtacggcggccaatca
gaacagagggtggagttctcgctcacgcacaatctgacggtgatcgctgattcgctggcg
gggatgagctacatggactccgcctcttctctgggcagcgccatcatacacgctgtcaat
aacctagttatgtcacagggcacccgcctggcacgtcgtaacgctgaactgtccttcgtc
ttcatcactgacggcatcactgcgggcaacagcctggaggagggcgtctcagccatgcgg
cgggccgagggcattcccacggtgatcgccatggggaccgacacggaccaggaagtgctg
aggaaggttgccctgggagacacgttggccatctttagaggggaggactacgccacgctg
gggaaacccaccttcttcgaacgcttcatccgctgggtctgctaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (7)   

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