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KEGG   Coregonus clupeaformis (lake whitefish): 121541725
Entry
121541725         CDS       T08357                                 
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320  PPAR signaling pathway
cclu04148  Efferocytosis
cclu04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    121541725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cclu03000]
    121541725
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:cclu03310]
    121541725
Transcription factors [BR:cclu03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    121541725
Nuclear receptors [BR:cclu03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   121541725
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 121541725
NCBI-ProteinID: XP_041706915
Position
27:29673829..29826492
AA seq 535 aa
METKPFLSLGFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHQRRISTGNTQRHLHIPSPS
SPSWQTQHLGRHLYEINSSGQVTSSPLGSPTSHRGMHPSLLSPSSMGPSGSLHSPISTLS
SPMNGLGSPFSVINSPMGPHSMSSPGMGYGPSVSPQMFQLNSQMNSVSSSEDIKPPLGLN
GVMKVPAQPSQGCMPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCR
DNKDCLIDKRQRNRCQYCRYQKCLACGMKREVLLHAAVQEERQRAKERSENEVESTSSVN
EDMPVEKILEAELAVEPKTETYIETNLGMPSNSPNDPVTNICQAADKQLFTLVEWAKRIP
HFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFD
RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQK
YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq 1608 nt   +upstreamnt  +downstreamnt
atggaaaccaaacctttcttgtcattggggttcctgaagccccagtgctcgctggctccg
cccccccagcgaggacgctcaggggaggcctgctcctgtttcaccggcatgtgtcacctc
caccagcgccggatatctacaggtaacacgcaacgtcatctccacatcccctcgccatct
tccccgtcatggcagactcagcacctgggaagacacctgtatgaaataaattcatcaggt
caggtgacctcgtctcccctgggctctcccacgtcccaccggggcatgcacccatccctg
ctcagcccgtcctccatggggccctcaggctccctacactctcccatcagcaccctgagt
tctcccatgaacggcctgggctcacccttttctgtcatcaactcccccatgggcccacac
tccatgtcctcgcccggcatgggctacggccccagtgtcagcccccagatgttccagctg
aactctcagatgaactcggtcagcagctcggaggacatcaagcccccgctgggtctcaac
ggggtgatgaaggtgcccgcccagccctcccaggggtgcatgcctctctccctcaccaaa
cacatctgtgccatctgcggagaccgctcctcaggtaaacactatggagtgtacagctgt
gagggctgtaaaggcttcttcaagaggacagtgcggaaggacttgacctacacctgccgc
gataacaaggactgtctgattgacaagcgccagcgcaaccgctgccagtactgccgctac
cagaagtgtctggcctgtggaatgaagagagaagttttgttacacgcagccgtccaggag
gagcgccagcgggccaaagagcgcagtgagaacgaggtggagtccaccagcagcgtcaac
gaggacatgcccgtggagaagatcctggaggccgagcttgctgtggaacccaagacagag
acctacatcgagaccaacctgggcatgccatcgaactcgcccaacgacccggtgactaac
atctgccaagcagccgacaagcagctctttacactagtggaatgggccaagaggatcccc
cacttctctgagctgcccctggacgaccaggtcatcctcctacgagcagggtggaatgag
ctcctcatcgcatccttctcacatcgttcgatagcggtgaaagatgggatcctcctagca
acagggctacacgtccatcgtaacagtgcccacagtgctggagtgggagccatttttgac
agagtgctcacagagctggtgtccaagatgagagacatgcagatggacaagacagagctg
gggtgccttcgagccatcgtcctcttcaacccagactctaaaggcttgtcaaacccaggt
gaggtggaggctttgagagagaaggtctacgcctctctggaggcctactgcaaacagaaa
tacccagatcagcctggcaggtttgccaagctgttgctgcggttaccagccctgcgctcc
attggtctgaagtgtctggagcacctgttctttttcaagctcatcggggacacgcccatc
gacaccttcctcatggagatgctagaggcgccccaccaaattacataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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