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KEGG   Caretta caretta (Loggerhead turtle): 125623575
Entry
125623575         CDS       T09292                                 
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
ccay  Caretta caretta (Loggerhead turtle)
Pathway
ccay03320  PPAR signaling pathway
ccay04148  Efferocytosis
ccay04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:ccay00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    125623575 (RXRA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ccay03000]
    125623575 (RXRA)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:ccay03310]
    125623575 (RXRA)
Transcription factors [BR:ccay03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    125623575 (RXRA)
Nuclear receptors [BR:ccay03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   125623575 (RXRA)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 125623575
NCBI-ProteinID: XP_048679116
Position
16:complement(8272087..8500823)
AA seq 486 aa
MDTKHFLPLDFSTQVNSTSLNSPTGRGPMAAPSLHPSIGPGIGSSLGSPGQLHSPISTLS
SPINGMGPPFSVISSPMGPHSMSVPSTPSLGFGTGSPQLNSPMNPISSTEDIKPPLGLNG
VLKVPAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREGMEHHPSRPTRLLGSQEEQAVQEERQRGKDRN
ENEVESTSSANEDMPVEKILEAELAVEPKTETYIEANMGLTPSSPNDPVTNICQAADKQL
FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNS
AHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKV
YASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE
APHQMT
NT seq 1461 nt   +upstreamnt  +downstreamnt
atggacaccaaacatttcctgccactggatttttctactcaagtcaattccacgtccctg
aactctccaactggccgggggcctatggccgcaccttccctccatccatccatcgggcca
ggcattggctcctcgctgggctctccgggtcagctccattcgcccatcagcactctgagc
tcccccatcaatggcatgggccctcctttctctgtcatcagctcccccatggggcctcac
tcaatgtctgtcccttcgactcccagccttggattcggaactggcagcccacagctcaat
tctccgatgaaccccatcagcagcacagaagatattaaaccacccttgggactcaatgga
gttcttaaagtgccagcacacccctcaggaaccatggcctccttcaccaagcacatatgt
gccatctgtggggacagatcttcaggtaaacattacggggtgtacagctgcgagggctgc
aaaggtttcttcaagcgtacagtgcggaaggacctcacctacacctgccgcgacaataag
gattgcttgattgacaagcgccagcggaaccgctgccagtattgccggtatcagaagtgc
ctggctatgggcatgaagcgagaagggatggagcaccatccatcccggcccacaagactt
ctgggaagccaagaagaacaagctgtgcaggaggagaggcagcgagggaaggaccgaaat
gagaacgaggtggagtcaacaagtagcgccaatgaggacatgcccgtggagaagatcctg
gaagctgaactcgcagtggagccaaagacagagacatacattgaggcaaatatgggcttg
actcctagctcgcccaatgacccggtaaccaacatatgccaagcggcagataaacagctc
ttcaccttggtggaatgggcaaagagaattccccatttttcagaactgccgttggatgac
caggtcatcttactcagagcaggctggaatgagcttctaatcgcctccttctcccaccgt
tccatagctgtgaaagacgggattctcctggccactggcctccatgtgcatcggaacagc
gctcacagtgcaggagtcggcgccatctttgatagagtactgacagaactcgtgtcaaaa
atgcgagacatgcagatggacaagacggagctgggctgcctgcgagccattgtcctcttc
aaccctgactcgaaaggactctccaaccccgctgaggtggaggctttgcgtgagaaggtg
tacgcgtcactagaggcatactgcaaacacaaataccccgaccagcctggaaggtttgcg
aaactcttgcttcgcctccccgccctccgatccattggcctgaaatgcctggagcacctg
ttcttcttcaagctaataggagacacgcccatcgacaccttcttgatggagatgctggaa
gcaccccaccaaatgacatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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