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KEGG   Cyanistes caeruleus (blue tit): 111931829
Entry
111931829         CDS       T05602                                 
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
ccae  Cyanistes caeruleus (blue tit)
Pathway
ccae04510  Focal adhesion
ccae04512  ECM-receptor interaction
ccae04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ccae00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    111931829 (COL6A1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111931829 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ccae04147]
    111931829 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:ccae00536]
    111931829 (COL6A1)
Exosome [BR:ccae04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   111931829 (COL6A1)
Glycosaminoglycan binding proteins [BR:ccae00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   111931829 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   111931829 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 DUF1194 VWA_3 vWA-TerF-like DUF5507
Other DBs
NCBI-GeneID: 111931829
NCBI-ProteinID: XP_023786273
Position
7
AA seq 1023 aa
MKLRDFLLTLLLPAGFLWGGSCAQRPEIITQVSSAEDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNRFIDKLTQRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQSELKNR
VSTINYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTREIDVEETINTIIDM
IKLNTEQLCCSFECQPPRGPLGPPGDRGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGKRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPP
GPKGDSGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGTPGNRGEPGPAGETGDEGALGED
GPPGERGSNGERGPPGSPGDRGPRGELGEPGPPGDQGREGPLGPPGDQGEPGPQGPKGYR
GDDGPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGNPGING
TKGYVGPKGDEGEAGDPGNDNLTPGPSGIKGAKGHRGREGPPGPPGPAGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLQRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGPADITLLVDSSTSVG
SKNFETTKKFVKRLAERFLEASKPTDDSVRISVVQYSGRNQQKVEAQFQYNYTVIAKAID
NMEFMNDATDVNSALQFITELYRRSTRAAAKKRVLVFSDGHSQGITARAIERAVQDAQKA
DIEIYVLAVGSQANEPNIRVLVTGKSTDYDVAYGERHLFRVPDYTSLLRGVFYQTVSRKI
AVD
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgaagctgcgagactttctgctcactctgctgctcccagccggcttcctgtgggggggc
tcatgtgctcagcgcccagaaatcatcacccaagtctcaagtgcagaagactgccccgtg
gacctgttcttcgtcctggacacctcagagagtgttgccctgagggtgaagccttttggg
gacctggttacacaagtgaaagatttcaccaaccggttcattgataagctgacccagagg
tactaccgctgcgaccgcaacctggtgtggaacgcaggagcactgcactacagtgatgag
gtggtgctcatcaagagcctcacaccaatgcccagcgggcagagcgagctgaagaaccgc
gtgtcgaccatcaactacatcgggaagggcacctacaccgactgtgccataaagcgcggc
atcgaggagctgctcattggtgggtcccatcacaaggagaataaatacctgatcgtggtg
actgatggacatcccttggaaggttataaggagccctgtggaggcctggatgatgctgcc
aacgaagccaaactcctggggatcaaagtgttctctgttgccatctcccctaaccacttg
gaccagaggctgaacatcattgccacagaccacgcctaccgccgcaacttcactgccacc
agcctgaagcccacccgggagatagatgtggaggagaccatcaacaccatcatagacatg
attaaactcaacacggagcaattgtgctgctcctttgagtgccagcctccccgagggccc
ctcggacctcctggtgaccgtggccatgagggagaacgaggcaagccaggtcttcctggc
cagaaaggagaggctggagacccaggcaggccaggagacatgggacctgttggctaccaa
ggaatgaagggtgacaaaggaagccgaggagaaaagggctcaagaggagccaaaggagcc
aagggtgagaaaggcaaacgtggaattgatggcattgatggcatgaagggtgaagctgga
taccccggattacctggctgcaagggctcacctggatttgatggagctcaaggcccacct
ggaccgaaaggagattctggtgcttttggacccaagggagcaaagggggagcccgggaat
gatggaaaacctggccgacaggggattcctggcaaccctggagagaagggcactcctggg
aaccggggtgagcctggaccagcaggagagactggtgatgagggtgctctaggtgaggat
ggtcctcctggagaacggggcagcaatggagagagaggacccccaggctcaccgggtgat
cgcgggccaagaggagagctgggagagcccggaccacctggtgaccaagggcgggaagga
ccccttggaccacctggtgaccagggtgagcccggaccccaaggacccaaaggctacagg
ggagatgacggcccccccggcagtgagggcccaaagggattgcctggagcacctgggctg
cctggggaccctgggctgatgggagaaaggggggaggatggtcctcctgggaatggcaca
attggattcacaggtgccccagggcagccaggagacagaggcaaccctggcattaatgga
acaaaaggctatgttggacctaaaggtgatgaaggggaagctggcgaccctggcaacgat
aacctgacccctgggcccagtggcatcaaaggagcaaagggccacaggggacgtgaaggt
cccccgggaccaccaggacccgcggggcctccaggaccagatgaatgtgaaatcttggac
atcatcatgaagatgtgctcttgctgtgagtgcacctgtggccccgtcgacctcctgttt
gttttggacagctcggagagcattggcctgcagaacttccagattgccaaggactttatc
atcaaagtcatcgaccgcttgagcaaggatgagcgagtcaagtttgaagctggggagtcc
cgtgtgggcgttgtgcagtacagccatgacaacacacaagaactggtggccatgggggat
gccaacattgacaacatcggggcgctcaagcaggcagtcaagaacctgcagtggattgct
gggggcacctacactggggaggctctgcagttcaccaaggacaacctgctgcagaggttc
acatccgacaagcgcgtagccatcgtcatcacagacgggcgctctgacaccctgcgggac
cccaccccactcaactccctgtgcgatgtcaccccggtggtttcccttgggatcggtgac
attttccggaaccctccaaatccagatcacttgaatgacatcgcatgtttaagcagacca
accaggccgggactgtccattcaaagggacaactatgctgagctcctggatgacaccttc
ttgcagaacatcacctcatatgtctgccaagagaaaaaatgtcctgactacacctgccca
atcaccttcactgggccagcagacatcacactgctggtggacagctccaccagcgtgggg
agcaaaaactttgagaccaccaagaagtttgtgaagcggctggcggagcggttcctggaa
gccagcaagcccaccgacgactctgtgcgcatctcggtggtgcagtacagtggccggaat
cagcagaaagtggaagctcagttccagtacaactacacagtcattgccaaggccatcgac
aacatggaattcatgaacgatgccacagacgtgaactccgctctgcagttcatcacagag
ctgtaccggcgctctacccgtgctgcagccaagaagagggtactggtgttttctgatgga
cactcccaagggatcactgccagggccattgagagggctgtgcaggatgcacagaaggct
gatattgagatatatgtgctagcagtgggcagccaagccaacgagccaaacatccgtgtc
ctggtcacagggaagagcacagattacgacgtggcttatggggagcggcaccttttccgt
gtgcctgactacacctctctgctgcgtggtgtcttctaccaaactgtctccaggaagata
gctgttgactga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (12)   

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