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KEGG   Carassius auratus (goldfish): 113064320
Entry
113064320         CDS       T07313                                 
Name
(RefSeq) retinoic acid receptor RXR-alpha-A-like isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03320  PPAR signaling pathway
caua04148  Efferocytosis
caua04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:caua00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    113064320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:caua03000]
    113064320
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:caua03310]
    113064320
Transcription factors [BR:caua03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    113064320
Nuclear receptors [BR:caua03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   113064320
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 113064320
NCBI-ProteinID: XP_026090833
Ensembl: ENSCARG00000053914
UniProt: A0A6P6M2B7
Position
46:complement(14814937..14945051)
AA seq 501 aa
MDPFCIDIHMGFLKPQCSIPLPPQRGRAEACTCFSGMCALHQRRLSTDSSGHMTSSPLSS
PTSHRGMHPSLLSPTSLGPSGSLHSPISTLSSPMNGLGSPFSVISSPMGPHSMASPGMGY
GPSISPQLNSPMNSVSSSEDIKPPLGINGVMKVPSQPLGTPLSLTKHICAICGDRSSGKH
YGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCIIDKRQRNRCQYCRYQKCLAMGMKREVLL
HTAVQEERQRARDRNENEVESTSSVNEDMPVEKILEAELAVEPKTETYIETNVPMPSNSP
NDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVK
DGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK
GLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL
IGDTPIDTFLMEMLEAPHQMT
NT seq 1506 nt   +upstreamnt  +downstreamnt
atggatcccttctgcattgatatacacatggggttcctgaaaccccaatgctcgatacca
ctgccacctcagagaggacgagcagaagcatgcacatgtttcagcggaatgtgtgctctt
catcaacgcaggctttctacagactcctctggacatatgacgtcctctcctctcagttct
cccacatcccaccgggggatgcacccgtcactgctgagcccgacttctttaggcccctca
gggtctctgcactcccccatcagcactctgagctcacccatgaacggcctgggctctccc
ttctctgtcatcagctcacccatgggaccacattccatggcatcacccgggatgggctac
ggccccagtatcagtccgcagctgaactcgcccatgaactctgtcagcagctcagaagat
atcaagccgcccctgggcatcaacggtgtgatgaaggtgccatcgcagcccttgggcacc
cccctgtccctcaccaaacacatctgtgccatctgtggcgaccgctcctcaggtaaacac
tacggtgtttacagctgcgaggggtgcaagggtttcttcaagaggactgtgcgcaaggac
ctgacttacacttgtcgagacagcaaggactgtattatcgacaaacgccagcgcaaccgc
tgccagtactgccgctatcagaagtgtttggccatgggaatgaaaagagaagtgttgtta
catacagccgtccaggaggagcgccagcgagcaagggaccgcaacgagaacgaggtggag
tcgaccagcagtgtgaacgaagacatgcctgtggagaagatcttggaagcggagctcgct
gtggagcccaagacggagacttacattgaaacgaatgtaccaatgccctcgaattcaccc
aatgatccagtcacaaacatctgtcaggccgcagacaagcagcttttcactctagtggaa
tgggccaagaggatcccgcatttttcagagctcccgctggacgaccaggtcattcttcta
cgagcaggatggaatgagctcctcattgcgtcattttcacaccgttcgatagcagtgaaa
gatgggatacttttggccacaggattgcatgtgcaccgcaacagcgcccacagcgccgga
gtaggagccatatttgacagggtgctgacggagttggtgtcaaagatgagagacatgcag
atggataaaacggagctagggtgccttcgagccatcgtcctcttcaacccagactccaaa
ggcctgtcaaacccaggtgaagtggaggcgctgagagagaaggtctatgcctctctggaa
gcctactgcaaacagaagtaccctgaacaacctggaaggtttgctaagctgttgctgcgg
ctccctgcccttcgttctattggactgaaatgtttggagcatctgttcttcttcaagctc
ataggagacacgccaatcgataccttcctcatggagatgctagaggcgccccaccaaatg
acataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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