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KEGG   Crassostrea virginica (eastern oyster): 111124564
Entry
111124564         CDS       T09197                                 
Name
(RefSeq) LOW QUALITY PROTEIN: retinoic acid receptor RXR-alpha-B-like
  KO
K08524  retinoid X receptor alpha
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    111124564
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cvn03000]
    111124564
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:cvn03310]
    111124564
Transcription factors [BR:cvn03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    111124564
Nuclear receptors [BR:cvn03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   111124564
SSDB
Motif
Pfam: zf-C4 Hormone_recep UPF0176_N
Other DBs
NCBI-GeneID: 111124564
NCBI-ProteinID: XP_022323234
UniProt: A0A8B8D6R5
Position
3:complement(37899816..37908639)
AA seq 470 aa
MAEPNFGFGVTDSSNRGEMQSPSGRGRNVQVNLSPQFQGAGDYTSENVDANFHMDMDNPQ
SSGSENMTPDIIGSQDIQIHNEGMSMSSVTVSQGAVHSPSNEHAVQPIIQVTGVNDDAQV
YTGGDDSSSNASPCMICNDRGSGYHYSVFSCEGCKGFFKRSVQKNLVYTCKNDGNCIINK
FXRNNCQYCRFVKCTQMGMKREAVREDRSPGGKHRNXKPRLDEIRAMVGSDGEVLFVPGA
QEAKPTETFEDPITEGLINARPDLIPRVDGNICLQSMGINQLMQYGYAELKYIIDWAKKV
PGFTELRLEDQMALLKSSFMELNVLRLSYRSMETGSCIKFAEGLKVPIELAQKMGWGKEL
VAATVEFSARLKELNIDKVEFCILNGIVLTYPDAQNLVDKQKVILLQTQILDRLRKYHGH
KFPGNVKRYGKMLLRLPFLRTVSAKAAERFLSLTLDGTLQLNELVLEMIN
NT seq 1413 nt   +upstreamnt  +downstreamnt
atggccgagccgaattttggctttggggtaactgacagctctaatcgaggagagatgcaa
tcaccaagtggcaggggcagaaatgtgcaagttaacctctcccctcaattccagggggct
ggcgattatacaagtgaaaacgtggatgctaacttccacatggatatggacaaccctcaa
agcagtgggtccgagaatatgaccccagacattatagggtcccaagacattcaaatccat
aatgagggaatgagcatgtcctctgtcacagtcagtcagggggctgtacactcacccagc
aatgagcatgctgtacaacctatcatacaggtcacaggggtcaacgatgatgctcaggta
tacactggaggagacgattcgtcatccaatgcctccccctgcatgatctgtaatgatcga
ggttcaggctaccattactcagtcttttcctgtgagggttgtaagggattcttcaagcgt
agtgtccagaagaacttggtgtacacctgcaaaaatgatggcaactgtatcatcaacaag
ttcnaccgaaacaactgtcagtattgccgcttcgtcaagtgcacacagatgggaatgaag
agagaagcggtgcgtgaggatagatctccaggggggaagcacagaaacnaaaaacctcga
ttggacgagattcgagccatggtaggctccgatggagaagttttgtttgttcccggagcc
caagaggccaagcccactgaaacatttgaggacccgatcacagagggactaatcaatgct
cgacctgatctcattccaagggttgatgggaacatttgtctgcaaagcatgggcattaat
cagctgatgcagtatggttatgcagagctaaagtacatcatcgactgggcaaagaaggtg
cctggttttacagaactacgcctggaggatcagatggctttactgaaatcctctttcatg
gagctgaatgtgctgcggctgtcctacaggtccatggaaactggaagctgcatcaagttt
gctgagggcctgaaggtgcctatagagctggcccagaagatgggctggggcaaggaactg
gtggcagctacagtggagttctcggctagactgaaggagttaaacattgacaaagtggag
ttctgtatcctgaatggcattgtgttgacttaccccgacgcacagaatttggtggacaag
cagaaagtcatactgcttcagacccaaatattagaccgtctgcgtaaatatcacggccac
aagtttccaggcaacgtaaagcgatatggtaaaatgttgcttcgtctaccattcctacgc
actgtcagtgcaaaagcagccgaaagatttttatcattgactctggatggtaccctacag
ttaaatgaactggtgttggagatgattaactga

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