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KEGG   Cuculus canorus (common cuckoo): 104064543
Entry
104064543         CDS       T08597                                 
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
cuca  Cuculus canorus (common cuckoo)
Pathway
cuca04510  Focal adhesion
cuca04512  ECM-receptor interaction
cuca04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cuca00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    104064543 (COL6A1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104064543 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cuca04147]
    104064543 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:cuca00536]
    104064543 (COL6A1)
Exosome [BR:cuca04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   104064543 (COL6A1)
Glycosaminoglycan binding proteins [BR:cuca00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   104064543 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   104064543 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 DUF1194 vWA-TerF-like VWA_CoxE DUF5507
Other DBs
NCBI-GeneID: 104064543
NCBI-ProteinID: XP_009565186
Position
6:35779045..35804875
AA seq 1023 aa
MRLRDFLLTLLVHAGFLGGGSWAQRPETATRVGNAEDCPVDLFFVLDTSESVALRVKPFG
DLVAQVKDFTNRFIDKLTNRYYRCDRNLVWNAGALHYSDEVVLIKSLTSMPSGRSELKNR
VSAVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKHLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTRELDVEETINTIIDM
IKVNTEQSCCSFECQPPRGLPGPPGDPGNEGERGKPGLPGQKGEAGEPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPA
GPKGDPGAYGPKGGKGEPGDDGKPGRQGIPGSPGEKGMPGNPGEPGPVGETGDEGAPGAD
GPPGERGSDGERGPPGSPGDRGPRGEPGDVGPPGDQGREGPLGPPGDQGEAGPSGPKGYR
GDDGPRGSEGPKGFAGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQTGDRGDPGING
TKGYVGPKGDEGEAGDPGNDNPTSGPRGIKGAKGHRGPEGRPGPPGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAIKNLKWIAGGTYTGEALQFTKENLLRRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTEPADITLLVDSSTSVG
SKNFETTKKFVKRLAERFLEAGKPADDSVRVSVVQYSGKNQQKVEAQFQYNYTVIAKAID
NMEFINDATDINAALRFITALYQRSARGSAKKRVLVFSDGNSQGITARAIERAVQEAQQA
GIEIYVLAVGSQANEPNIRVLVTGKSADYDVVYGERHLFRVPDYTSLLRGVFYQTVSRKI
AVD
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgagactgcgagactttctgctcactttgctggtccacgccggcttcctgggggggggc
tcttgggctcagcgcccagaaacagccacccgagtcggaaatgctgaagactgccctgtg
gacttgttctttgtcctggacacctcagagagtgttgccctgagagtgaagccctttggg
gacctggttgcccaagtgaaagatttcaccaaccggttcattgataagctgacaaacagg
tattaccgctgtgaccgcaacctagtatggaatgccggggcactgcactacagtgatgaa
gtcgtgctcatcaagagcctcacctcgatgcccagcggccggagtgagctgaagaatcgt
gtttcagctgtgaactacattgggaagggcacctacactgactgtgccataaagagaggc
atcgaggagctgctcatcggtggctcccatcataaagagaataaatacctgatcgtggtg
actgatggacaccccttggaagggtacaaggagccttgcggaggtctggacgatgctgcc
aatgaagccaaacatttggggatcaaagtgttctctgttgccatctcccccaaccacctg
gaccagcggctcaacatcattgcaacggaccatgcctaccgccgcaacttcactgccacc
agcctgaagccaacccgggaacttgatgtggaagaaactatcaacaccatcattgacatg
attaaggttaacacagagcagtcgtgctgctccttcgagtgccagcctccccgagggctc
cccggacctcctggtgacccaggcaatgagggagaaagaggcaagccaggtcttcccggc
cagaaaggagaggctggagaaccaggcaggccaggggacatgggacctgtcggctaccaa
ggaatgaagggtgacaaaggaagtcgaggagaaaagggctcgagaggagccaaaggagcc
aagggtgagaagggcaggcgtggaatcgatggcatcgatggcatgaagggtgaagctgga
taccctgggttacctggctgcaaaggctcacctggattcgacggagctcaaggcccagct
ggaccaaaaggagatcctggtgcttatggacccaagggaggaaagggggagcctggggat
gatggaaagcctggccgacaagggattcctggcagccctggagagaagggcatgcctgga
aaccctggtgagcctggaccagtgggagaaacgggcgatgagggtgctccaggtgcagat
ggtcctcctggagaacgtggcagcgatggagaaagaggcccaccgggctcaccgggtgac
cgtgggccaagaggagagccgggagatgttggaccacctggtgaccaagggcgggaagga
cctcttggaccacctggcgaccagggtgaggctggaccctctggacccaagggctacaga
ggagatgatggaccccgtggcagtgagggcccaaagggattcgctggagcaccagggctg
cctggagaccctggcctgatgggagaaaggggtgaggatggccctcctgggaatggcacg
attggattcacaggtgcccctgggcagacaggagacagaggtgaccctggcattaacgga
acaaaaggctatgtcggtcctaaaggcgatgaaggggaggctggagaccctggcaatgat
aacccaacctctggccccaggggcatcaaaggagcaaagggccaccggggacctgaagga
cgcccaggaccaccaggacctgtgggacctccagggccagatgaatgtgaaatcttggac
atcatcatgaagatgtgctcctgctgtgagtgcacctgtggtcctgtcgacctcctcttt
gtgttggacagctcggagagcatcggtttgcagaatttccagattgctaaggacttcatc
atcaaagtcatcgaccgcctgagcaaggatgagcgtgtgaagtttgaagctggggagtcc
cgtgtgggcgttgtgcagtacagccatgacaacacacaggagctggtggccatgggggat
gccaacatagacaacataggggcactcaaacaggcaatcaagaacctcaaatggatagct
gggggcacctacactggagaagccctgcagttcactaaagaaaacctgctgcggagattc
acctctgacaagcgagtcgctattgtcattacagatggacgctctgacacactgcgggac
cctaccccgctcaactctctgtgcgatgtcaccccggtggtttcccttgggataggagat
attttccggaaccctccaaatccagatcacctgaatgacattgcttgtttaagcagacca
acaaggccaggactatccattcaaagggacaactatgctgagctcctggatgacaccttc
ttgcagaacatcacctcgtatgtctgtcaagagaagaaatgtccggactacacctgccca
atcaccttcactgagccagcagacatcacgctgttggtggacagctccaccagcgtgggg
agcaagaactttgagaccaccaagaagttcgtgaagcggctggcagagcggttcctggag
gctggcaagcctgccgatgactccgtccgtgtctcagtggtccagtacagtggcaagaat
cagcagaaagtggaagctcagttccagtacaactacacggtcattgccaaagccatcgac
aacatggagttcattaacgacgccacagacatcaatgccgctctgcgtttcatcacggca
ctgtaccagcggtccgcccgtggtagtgcaaagaagagggtgttggtgttttctgatggc
aactctcaagggatcactgcaagggctattgagagggctgtgcaggaagctcagcaggct
ggcattgagatctatgtgctggcagtgggcagccaagccaatgagccaaacattcgtgtg
ttggtcaccgggaagagcgcagactatgatgtggtctatggggagcgccacctctttcgt
gtgcctgactatacctctctgctgcgtggtgtcttctaccaaactgtctccaggaaaata
gctgttgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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