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KEGG   Cyprinodon tularosa (White Sands pupfish): 119772032
Entry
119772032         CDS       T07496                                 
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
ctul  Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03320  PPAR signaling pathway
ctul04148  Efferocytosis
ctul04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:ctul00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    119772032 (rxraa)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ctul03000]
    119772032 (rxraa)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:ctul03310]
    119772032 (rxraa)
Transcription factors [BR:ctul03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    119772032 (rxraa)
Nuclear receptors [BR:ctul03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   119772032 (rxraa)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1 tRNA_bind_3
Other DBs
NCBI-GeneID: 119772032
NCBI-ProteinID: XP_038124221
Position
Unknown
AA seq 504 aa
METKPFLSLGFLKPQCSLAPPMQRGRSSEACSCFSGVCPLHQRRLSSDSSGQVTSSPLGS
PTSHRGMHPSLLSPTSMGPSGSLHSPISTLSSPMNGLTSPFSVISSHMGPHSMNSPGMGY
GPSISPQMFQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSGTALSLTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCFIDKRQRNRCQYCRYQKCLAMGMKRE
VLLHAAVQEERQRAKDKNENEVESTSCANEDMPVEKILEAEEAVEPKTETYIETNLGMPS
NSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI
AVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP
DSKGLSNPVEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggaaaccaaaccgttcctgtcattggggtttttgaagccccagtgctcattggccccc
cccatgcagcgaggtcgttcatcagaggcgtgctcctgttttagcggcgtttgtccgctt
caccagcgtcgactatcatcagattcttcaggacaggtgacctcctcgcctttaggctcg
cctacttcccatcgtggaatgcacccttctctgctgagtcccacctccatggggccctct
ggctctctccattctccaatcagcaccctgagctcaccaatgaatggcctcacctcaccc
ttctcagtcattagctcacacatggggccgcactccatgaactcgcctggcatgggctac
ggccccagcatcagccctcagatgtttcagctaaactctccaatgaactcggttagcagc
acggaggatattaaacctccgctgggactcaatggcgtgatgaaggtgcccgctcagccc
tcaggcacggccctgtccctgactaaacacatctgcgccatctgtggagaccgctcctca
ggaaaacactatggagtctacagttgtgaaggctgcaaaggtttcttcaagaggactgtg
cgcaaagatttgacctacacctgccgtgacaacaaggactgtttcatcgataaacgacag
aggaaccgctgtcagtactgtcgctaccagaagtgcttggccatgggcatgaagagagaa
gttttgttacatgcagccgtccaggaggagcgccagcgtgccaaggacaagaacgagaac
gaggtggagtccaccagctgcgcgaacgaggacatgcccgtagagaagatcctcgaggcc
gaggaggcggtggagcccaaaaccgagacctacatcgagaccaaccttggcatgccatct
aactcgcccaacgacccagtgacaaatatctgtcaggcagcggacaaacaactcttcaca
ctggtggagtgggccaagaggattccccacttctcggagctgccgctggacgaccaggtc
atcctgctacgagcaggttggaatgaactcctcattgcatcattttcacaccgttccatc
gcagtaaaggatgggattctgttggcgacagggctgcacgtgcatcgcaacagcgcccac
agtgctggagtgggagccatctttgacagagtgctcacagagctggtgtcaaagatgaga
gacatgcagatggataagactgagctggggtgccttcgagccatcgtccttttcaaccca
gactccaaaggtttgtccaacccggttgaggtggaggctttgagagagaaagtctacgct
tctttagaggcttactgcaaacagaaataccccgaacagccaggcaggtttgccaagctg
ttgctacggttaccagcgctgcgctccatcgggctcaagtgtttggagcaccttttcttc
ttcaagctcatcggcgacacacccattgataccttcctcatggagatgctagaagcccct
catcaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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