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KEGG   Betta splendens (Siamese fighting fish): 114844865
Entry
114844865         CDS       T08231                                 
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
  KO
K06238  collagen type VI alpha
Organism
bspl  Betta splendens (Siamese fighting fish)
Pathway
bspl04510  Focal adhesion
bspl04512  ECM-receptor interaction
bspl04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:bspl00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    114844865 (col6a2)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    114844865 (col6a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:bspl04147]
    114844865 (col6a2)
   00536 Glycosaminoglycan binding proteins [BR:bspl00536]
    114844865 (col6a2)
Exosome [BR:bspl04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   114844865 (col6a2)
Glycosaminoglycan binding proteins [BR:bspl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   114844865 (col6a2)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   114844865 (col6a2)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3
Other DBs
NCBI-GeneID: 114844865
NCBI-ProteinID: XP_028988360
UniProt: A0A6P7L137
Position
17:5343992..5360689
AA seq 1019 aa
MLRLEVIGLCLLLGALTHSQAPPCLVMSQGLPQPEKDCPINVYFTIDTSETIALQEPPPG
SLVNSIKTFTVEFANRLEDAELKDGVKINWNIGGLHFSQTKEVFSQIGPKAKFIQGVRNI
RYLGKGTYIDCALSNMTHEMKQIPSETRGLRFAVVITDGHVTGNICGGIKVTAERARDEG
IRIFVVAASKNVDEIGLKEIANSPSTVYRSDFMAVDLSQGRAEIQYDTIDRIIKTMKHLS
YVECHSVSCLETEGPRGPKGYRGQKGVKGDNGGAGEKGDKGRPGDPGIEGPIGLPGNKGE
PGLKGDKGELGGQGKKGVAGVPGRNGTDGQKGKIGRIGAPGCKGDPGDRGPDGYPGEVGE
RGTPGSDGEKGDPGRPGRTGPPGPSGDAGPKGERGSPGLPGLPGQKGNPGTAGGPGQRGE
PGRRGDYGPKGAQGPDGSKGEKGEMGPEGQRGFSGETGNDGAKGDSGLPGPRGPPGSPGE
SGRNGTRGDPGEAGPRGEPGQPGPKGDRGRPGFSYPGPRGPSGDRGEKGNRGGRGSRGDC
GQKGEPGGKGGPGEPGEPGPPGEPGARGPRGESGRDGDPGPGGDPGLTECDVMNYIRETC
GCCDCEKRCGAVDIVFVIDSSESVGLTNFTLEKNFVINTMNRLGSLAKDPKSETGTRVGV
VQYSHSGTFQAIRLDDPKIDSLSSFKDAVKRLEWIAGGTWTPSALKYAYDNLIRDSRRAK
ANVTVVVITDGRFDPRDDDSLLTYLCSHAGVDVSAIGIGDMFDKIEDNESLKSIACQKDG
RVMGMRRFADLVAEEFIDKIETVLCPDPVIICPELPCKSEPAVASCIQRPVDIVFLLDGS
ERMGLENHRRAKEFIENVARGLTLANGPSDERNARLALVQFGGATEQRVEFALTHNLTVI
SDSLANVVYMDSSSNLGSAIIHTVNNVFSQPGNRLNRRNAEVSFVFITDGITAREQLDEG
ITAMRRAEGVPTVIAIGGDTDEEVLQKVALGDRSAIFRGSDYTVLNKSSFFDRFIRWIC
NT seq 3060 nt   +upstreamnt  +downstreamnt
atgctgagattagaggtcatcgggttgtgtcttctgttaggagctttgactcatagccaa
gcaccaccgtgcttggttatgagtcaaggcttgccacagccagaaaaggattgccccata
aatgtctacttcaccatagacacatctgagactattgccctgcaggagccacctcctgga
tcgctggtcaacagcatcaagacattcaccgtggagtttgcgaaccgcctagaagacgct
gaattgaaggatggtgtgaagattaactggaacattggcgggttgcatttttcccagacg
aaggaggtgttcagccagatcggtcccaaggccaagtttattcaaggggtccgaaacatc
cggtacctgggtaagggcacctacatcgactgtgccctctccaacatgacccacgagatg
aagcagataccctcagaaaccagggggctccgctttgctgtggttatcaccgacggccac
gttactggaaacatttgtgggggcatcaaggtgacagcggagagagcacgggatgagggc
atccgcatctttgtcgtggcggcatccaagaacgttgatgagattggcttgaaggagatc
gccaattctccatcaacagtctacaggagtgacttcatggctgtggatctgagccaaggc
agagcagaaatacagtatgacacgattgaccgcatcatcaaaacaatgaaacacttgtcc
tatgtagagtgtcatagtgtgtcctgtctagagacagaagggccccgtggcccaaaaggc
tatagagggcaaaaaggagttaaaggcgacaacggtggtgcgggtgagaagggagacaaa
ggtcgcccaggagaccctggtatcgaggggcccattggtctgcctggtaacaaaggtgaa
ccaggtcttaaaggtgataagggagagctgggaggtcaggggaagaagggtgtggccggg
gtcccagggcgtaatgggactgatggacagaagggtaaaattggacgaattggcgcacct
ggctgcaaaggagacccaggagacagaggtcccgatggataccctggagaagtcggtgaa
cgtggtactcctggaagtgacggagagaagggagacccaggacgccctggaagaacgggt
ccccctggcccatcaggagatgctggaccaaaaggagagaggggaagtcctggattacct
ggtcttcctggacagaagggaaacccaggaactgcaggaggtccaggacaaagaggagag
ccggggagacgaggagactatgggccaaagggcgctcaagggcctgatggaagtaaagga
gaaaagggtgaaatggggccagaaggacaaagaggattttcaggtgaaacaggaaacgat
ggagcaaagggagacagtggcctgccaggacccagggggccaccaggatccccaggagaa
tcggggagaaatgggaccagaggtgaccctggtgaagctggaccaagaggagagcctggg
cagcctgggccaaagggagaccgtgggagacctggcttcagttatcctggaccgagagga
ccatcgggtgacagaggagaaaagggtaatcgtggaggtcgtgggagcaggggagactgt
ggccaaaagggcgagcctggaggcaaaggaggcccaggagaaccaggtgagccagggcct
ccaggtgagccgggggcgagaggacctagaggagagtctggacgtgatggagatccgggc
cctgggggagatcctggcctcactgaatgtgatgtcatgaactacatcagggagacgtgt
ggctgctgtgactgtgagaaacgctgcggagctgtggacattgtgtttgtgatcgacagt
tcagagtctgtgggtcttaccaatttcaccctggagaagaacttcgtcattaacaccatg
aacagactgggatcgctagctaaggaccccaagtcggagacaggcacaagggtgggagtt
gtccagtacagtcacagtggaaccttccaggccattcggcttgatgaccccaagatagat
tcactgtcttctttcaaggatgcagtgaaacgtttggagtggattgctggaggcacgtgg
actccgtctgccctgaagtatgcctacgacaacctaatacgggacagccgcagagccaaa
gccaacgtcacagtagtggtcatcaccgatggacgcttcgaccccagagacgacgactcg
ctgctcacctacctctgcagtcacgctggtgttgacgtgagcgccattggcatcggagac
atgtttgacaagattgaggacaatgagagtctgaagagcatcgcctgccagaaggacgga
cgggtgatggggatgaggcgcttcgcagatttggtcgcagaggaatttattgacaaaatt
gagaccgttctgtgcccagatcctgtcatcatatgccctgagcttccttgtaaatcagag
cctgctgtagctagctgcattcagcggcccgtggacatagtgttcctcttggatggttct
gagaggatggggctggagaaccaccgcagggccaaggagttcattgagaatgtggctcga
ggcctcaccctggccaacggcccgtcggatgagaggaatgcccgtttggctctggtgcaa
tttggtggcgcaacagaacagagggtggagttcgctctcacacacaatctcacagtgatc
tcagattcactggcaaatgtggtctacatggactcttcctctaacctgggcagcgctatc
atccacactgtcaacaatgtgttttcccagccaggaaaccggctgaatcgtcgcaacgct
gaggtgtcctttgtgttcatcactgatggcatcacagcccgtgagcagctggatgagggc
ataactgccatgagacgagctgaaggcgttcccacggtgatcgccataggaggtgacacc
gatgaggaggtgctgcagaaggtggcactaggggacaggtcggccatctttagaggaagc
gactacacggtgctcaacaaatcctcgttctttgatcgcttcatccgctggatatgctaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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