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KEGG   Astyanax mexicanus (Mexican tetra): 103036996
Entry
103036996         CDS       T05042                                 
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X3
  KO
K08524  retinoid X receptor alpha
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03320  PPAR signaling pathway
amex04148  Efferocytosis
amex04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:amex00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    103036996 (rxraa)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:amex03000]
    103036996 (rxraa)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:amex03310]
    103036996 (rxraa)
Transcription factors [BR:amex03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    103036996 (rxraa)
Nuclear receptors [BR:amex03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   103036996 (rxraa)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3 CRT10
Other DBs
NCBI-GeneID: 103036996
NCBI-ProteinID: XP_022532283
Ensembl: ENSAMXG00000006849
Position
17:44244342..44514535
AA seq 497 aa
MDPFYLDIHMGFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHQHRLSTDSSGQVTSSPLS
SPTSHRGMHPSLLSPSSIGASGSLHSPISTLSSPMNGLGSPFSVISSPMGPHSMASPGMG
YGPSVSPQLNSPMNSVSSSEDIKPPLGLNGVMKVPAQPSGTPISLTKHICAICGDRSSGK
HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRYQKCLAMGMKREAV
QEERQRAKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYIETNLGMPSNSPNDPV
TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGIL
LATGLHVHRNSAHCAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSN
PGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT
PIDTFLMEMLEAPHQMT
NT seq 1494 nt   +upstreamnt  +downstreamnt
atggaccctttctacctggacatccacatggggttcctgaagccccagtgctctctggct
ccgccccctcagagaggccgttcaggggaagcttgctcctgtttcactggcatgtgtcat
ctccatcagcacagactgtccacagactcatcaggtcaggtgacctcgtctcccctgagc
tcgcctacgtctcaccgtgggatgcacccgtcattgctcagcccgtcttccatcggggcc
tctgggtctctccattcccccatcagcaccctcagctcacccatgaacggcctgggctct
cctttctccgtcatcagctctcccatgggcccccactctatggcctcccccgggatgggc
tacggccccagcgttagcccacagctgaattcgccaatgaactccgtcagtagctctgag
gacatcaagcctccgctgggtctaaacggcgtgatgaaagtacccgctcagccctcgggc
acacccatctccctcaccaaacacatctgtgccatctgtggagaccgctcgtctggtaaa
cactatggcgtgtacagctgcgagggctgcaagggcttctttaagaggaccgtacggaag
gacctgacctacacctgcagagacaacaaagactgcatgatagacaaacgccagcgcaac
cgctgccagtactgccgctaccagaagtgtctggccatgggcatgaagagagaagctgtc
caggaggaacgccagcgagccaaagaccgaaacgagaacgaggtggagtccaccagcagc
gccaacgaggacatgcccgtggagaagatcctggaggccgagctggccgtcgagcccaag
actgagacttacatcgagaccaacctgggcatgccgtccaactcaccgaatgatccggtc
actaatatctgccaggcagcagataaacagctcttcactctggtggagtgggccaagagg
atcccccacttctctgaactgcctctggatgatcaggtcatcctgctgcgagcaggctgg
aatgagctgctcatcgcatcgttctcgcatcgctccatagccgtgaaggacggcatcctg
ctggccaccgggctccacgtgcaccggaacagcgcccactgcgcaggagtgggagccata
ttcgacagggtgctgacggagttggtgtcgaagatgagagatatgcagatggataaaaca
gagctggggtgtctgcgtgccattgtgctctttaatccagactccaaaggcctgtcgaac
ccaggggaggtggaggctctgagggagaaggtgtacgcctctctggaggcctactgcaag
cagaaataccctgaacagcctggaaggttcgccaagctgttgctgcggctgccggcgctc
cgctccatcggcctcaagtgtctggagcacctgttcttcttcaagctcataggggacacg
cccatcgacaccttcctcatggagatgctggaggcgccccaccaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (35)   

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