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KEGG   Oncorhynchus nerka (sockeye salmon): 115146915
Entry
115146915         CDS       T07952                                 
Name
(RefSeq) retinoic acid receptor RXR-alpha-B-like
  KO
K08524  retinoid X receptor alpha
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03320  PPAR signaling pathway
one04148  Efferocytosis
one04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:one00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    115146915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:one03000]
    115146915
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:one03310]
    115146915
Transcription factors [BR:one03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    115146915
Nuclear receptors [BR:one03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   115146915
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 DUF5558 tRNA_bind_3
Other DBs
NCBI-GeneID: 115146915
NCBI-ProteinID: XP_029544783
Position
LG19:21319396..21470191
AA seq 484 aa
METKPFMSLESTILPMGWFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHHPRISTGNTQR
HLHIPSPSSPSWQTPHLGRHLYQINSSGQVTSSPLSSPTSHRGMHPSLLNPSSMGPSGSL
HSPISTLSSPMNGLGSPFSVINSPMGPHSMSSPGMGYGPSVSPQLNSQMNSVSSSEDIKP
PLGLNGVMKVPAQPSPGCMPLSLTKHICAICGDRSSGPEPVLLHTAVQEERQRAKERSEN
EVESTSGVNEDMPVEKVLEAELAVEPKTETYTETNLGMPSNSPNDPVTNICQAADKQLFT
LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH
SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA
SLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP
HQMT
NT seq 1455 nt   +upstreamnt  +downstreamnt
atggaaaccaaacctttcatgtcattggaatctacaatcctgcctatgggatggttccta
aagccccagtgctcgctggctccgcccccccagcgaggacgctcgggggaggcctgctcc
tgtttcaccggcatgtgtcacctccaccacccccggatatctacaggtaacactcaacgc
catctccacatcccctcgccatcttccccgtcatggcagactccgcacctgggaagacac
ctgtatcaaataaattcatcaggtcaggtgacctcatctccactgagctctcccacgtcc
catcggggcatgcacccatccctgctcaacccgtcctccatggggccctcaggctccttg
cactctcccatcagcaccctgagttctcccatgaacggcctgggctcgcccttttctgtc
atcaactcccccatgggcccacactccatgtcctcgcccggcatgggctacggccccagt
gtcagcccccagctgaactcccagatgaactccgtcagcagctcggaggacatcaaaccc
ccgctgggtctcaacggggtgatgaaggtgcccgcccagccttcgccggggtgcatgcct
ctctccctcaccaaacacatctgtgccatctgcggagaccgctcctcaggaccggaacca
gttttgttacacacagccgtccaggaggagcgccagcgggccaaagagcgcagcgagaac
gaggtggagtccaccagcggcgtcaacgaggacatgcccgtggagaaggtcctggaggcc
gagctcgctgtggaacccaagaccgagacctacaccgagaccaacctgggcatgccatcc
aactcgcccaacgacccggtgactaacatctgccaagcagccgacaagcagctctttaca
ctggtggagtgggccaagaggatcccccacttctctgagctgcccctggacgaccaggtc
atcctcctacgagcagggtggaatgagctcctcatcgcatccttctcacaccgttcgata
gcggtgaaagatgggatcctcctggcaacagggctacacgtccatcgtaacagcgcccac
agtgctggagtgggagccatctttgacagagtgctcacagaactggtgtccaagatgaga
gacatgcagatggataagacagagctggggtgccttcgagccattgtcctcttcaaccca
gattctaaaggcttgtcaaacccaggcgaggtggaggctttgagagagaaggtctacgcc
tctctggaggcctactgcaaacagaaatacccggatcagcctggcaggtttgccaagctg
ttgctgcggttaccagccctgcgttccattggtctgaagtgtctggagcacctgttcttt
ttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgctagaggcgccc
caccaaatgacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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