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KEGG   Onychostoma macrolepis: 131528238
Entry
131528238         CDS       T09350                                 
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
omc  Onychostoma macrolepis
Pathway
omc03320  PPAR signaling pathway
omc04148  Efferocytosis
omc04920  Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:omc00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    131528238 (rxraa)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:omc03000]
    131528238 (rxraa)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:omc03310]
    131528238 (rxraa)
Transcription factors [BR:omc03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    131528238 (rxraa)
Nuclear receptors [BR:omc03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   131528238 (rxraa)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 131528238
NCBI-ProteinID: XP_058613226
Position
21:complement(18405027..18603181)
AA seq 524 aa
MDPFCLDIHMGFLKPQCSIPPPPQRGRAEACTCFSGMCALHQRRLSTDLLIPRTPKCDDP
FRWTPYLKYKDSSGQVTSSPLSSPTSHRGMHPSLLSPNSLGHSGSLHSPISTLSSPMNGL
GSPFSVISSPMGPHSMASPGMGYGPSISPQLNSPMNSVSSSEDIKPPLGINGVMKVPAQP
SGTPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCIIDKRQ
RNRCQYCRYQKCLAMGMKREVLLHTAVQEERQRAKDRNENEVESTSSVNEDMPVEKILEA
ELAVEPKTETYIETSVPMPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQV
ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR
DMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKL
LLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1575 nt   +upstreamnt  +downstreamnt
atggatcccttctgccttgatatacacatggggttcctgaaaccccagtgctcgatacca
ccgccacctcagagaggacgagcagaagcatgcacgtgtttcagcggaatgtgtgctctt
catcagcgcaggctttctacagacttgttaataccaaggacccccaaatgtgatgatccc
tttagatggaccccctacctaaaatataaagactcctcgggacaggtgacgtcctctcct
cttagctcacccacgtcccaccgggggatgcatccgtcactgctaagcccgaattcatta
ggccactcggggtctctgcactcccccatcagcactctgagctcgcccatgaatggcctg
ggctctcccttctctgtcatcagctcgcccatggggccacattccatggcgtcacccggg
atgggctacggccccagcatcagcccacagctgaattcgcccatgaactctgtcagcagc
tcagaagatatcaagccgccgctgggcatcaacggtgtgatgaaggtgccagcccagccc
tcgggcacccccctttccctcaccaaacacatctgtgccatctgcggcgaccgatcctca
ggcaaacactatggtgtgtacagctgcgaggggtgcaagggtttcttcaagaggactgtg
cgtaaggacctcacctacacttgtcgagacagcaaggactgtattatcgataaacgccag
cgcaaccgctgccagtactgccgctatcagaagtgtttggccatgggcatgaagagagaa
gtattattacatacagccgtccaggaggagcgccagcgagccaaggaccgcaacgagaat
gaggtggagtcgaccagcagtgtaaacgaagacatgcctgtggagaagatcctggaagcg
gagcttgctgtggagcccaagacggagacttacattgaaaccagtgtaccgatgccctcc
aattcacccaatgatccagtcacaaacatctgtcaggccgcagacaagcagctcttcact
ctagtggaatgggccaaaaggatccctcatttttcagagctcccgctggacgaccaggtc
attcttctacgagcaggatggaatgagctcctcattgcgtcattttcacaccgttcaata
gcagtgaaagatgggatactgttggccacaggattgcacgtgcaccggaacagcgcccac
agcgccggtgtaggagccatatttgacagggtgctgacagagttggtgtcaaagatgaga
gacatgcagatggataaaacagagctagggtgccttcgagccattgtcctcttcaatcca
gactccaaaggcctgtcaaacccaagtgaggtggaggcgctgagagagaaggtctatgcc
tctctggaagcctactgcaaacagaagtaccctgaacaacctggaaggtttgctaagctg
ttgctgcggctccctgccctgcgttccattggactgaagtgtttggagcatctgttcttc
ttcaagctcataggggacacgcccatcgataccttcctcatggagatgctagaggcgccc
caccaaatgacataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (27)   
   RefSeq(pep) (27)   
DNA sequence (27)   
   RefSeq(nuc) (27)   
Protein domain (4)   
   Pfam (4)   
All databases (68)   

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