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KEGG   Onychostruthus taczanowskii (white-rumped snowfinch): 121336743
Entry
121336743         CDS       T07590                                 
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
otc  Onychostruthus taczanowskii (white-rumped snowfinch)
Pathway
otc04510  Focal adhesion
otc04512  ECM-receptor interaction
otc04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:otc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121336743 (COL6A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121336743 (COL6A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121336743 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:otc04147]
    121336743 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:otc00536]
    121336743 (COL6A1)
Exosome [BR:otc04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   121336743 (COL6A1)
Glycosaminoglycan binding proteins [BR:otc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121336743 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   121336743 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 DUF1194 vWA-TerF-like DUF5507
Other DBs
NCBI-GeneID: 121336743
NCBI-ProteinID: XP_041262059
Position
Unknown
AA seq 1023 aa
MKLRDFLLTLLLPAGFLWRGSCAQRPEIITQVSSTEDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNRFIDKLTQRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQNELKNR
VSSVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTREIDVEETINTIIDM
IKLNTEQSCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGRKGEAGYPGLPGCKGSPGFDGAQGPP
GPKGDPGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGVPGNQGEPGPAGETGDEGALGED
GPPGERGSNGERGPPGSPGDRGLRGQPGQPGPPGDQGREGPLGPPGDQGEPGPSGPKGYR
GDDGPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGNPGING
TKGYVGPKGDEGEAGDPGNDNLTPGPSGIKGAKGHRGREGPPGPPGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLRRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGPADITLLVDSSTSVG
SKNFETTKKFVKRLAGRFLEASKPTDDSVRISVVQYSGRNQQKVEAQFLYNYTVIAKAID
NMEFMNDATDVNSALQFITELYRRSARTAAKKRVLVFSDGHSQGITARAIERAVQDAQKA
DIEIYVLAVGSQANEPNIRVLVTGKSADYDVAYGERHLFRVPDYSSLLRGVFYQTVSRKI
AVD
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgaagctgcgagactttctgctcactctgctgctcccggccggcttcctgtggcggggc
tcatgtgctcagcgcccagaaatcatcacccaagtctcaagcacagaagactgccctgtg
gacctgttcttcgtcctggacacctcagagagtgttgccctgagggtgaaaccctttggg
gacctggttacccaagtgaaagatttcaccaaccggttcattgataagctcacccagagg
tactaccgctgcgaccgcaacctggtgtggaacgcgggagcgctgcactacagcgatgag
gtggtgctcatcaagagcctcacaccgatgcccagtgggcagaacgagctgaagaaccgt
gtgtcatctgtcaactatatcgggaagggcacctacaccgactgcgccataaagcggggc
atcgaggagctgctcatcggtggttcccatcacaaggagaataaatacctgattgtggtg
actgatggacatcccttggaaggttacaaggagccctgtggaggcctggatgatgctgcc
aatgaagccaaactcctggggatcaaagtgttctctgttgccatctcccccaaccacttg
gaccagcggctgaacatcattgccacagaccacgcctaccgacgcaatttcactgccacc
agcctgaaacccacccgggagattgatgtggaggagaccatcaacaccatcatcgacatg
attaaacttaacacagagcaatcgtgctgctcctttgagtgccagcctcccagagggccc
cccggacctcctggcgaccctggccatgagggagaacgcggcaagccaggtcttcccggc
cagaaaggagaggctggggacccaggcaggccaggagacatgggacctgttggctaccaa
ggaatgaagggtgacaaaggaagccgaggagaaaagggctcaagaggagccaaaggagcc
aagggtgagaaaggcagacgtggaatcgatggcattgatggcaggaagggtgaagctgga
taccctggattacctggctgcaaaggctcacccggattcgacggagctcaaggcccacct
ggaccaaagggagatcctggtgcttttggacccaagggagcaaagggggagcctgggaac
gatggaaagcctggccgacaggggattcctggcaaccctggagagaagggagttcctggg
aaccagggtgagcctggaccagcaggagagacaggtgacgagggtgctctaggtgaggat
ggtcctcctggagaacggggcagcaatggagagagaggacccccaggctcgccgggtgac
cgtgggctgagaggacagccgggacagccaggaccacctggagaccaagggcgggaagga
cccctcggtccacctggcgatcagggtgagcctggaccttcaggacccaaaggctacagg
ggagatgatggcccccccggcagtgagggcccaaagggattgcctggagcacctgggctg
cctggggaccctgggctgatgggagagaggggggaggatggtcctcctgggaatggcaca
attggattcacaggtgccccagggcagccaggagacagaggcaaccctggcattaacgga
acaaaaggctatgttggacctaaaggtgatgaaggggaagctggcgaccctggcaatgat
aacctgacccctgggcccagtggcatcaaaggagccaagggccacaggggacgtgaaggt
cccccgggaccaccaggacccgtggggcctccaggaccagatgaatgtgaaatcttggac
atcatcatgaagatgtgctcttgctgcgagtgcacctgtggtcctgtcgacctcctgttt
gtgttggacagctccgaaagcatcggcctgcagaacttccagattgccaaggacttcatc
atcaaagtcatcgaccgcctgagcaaggatgagcgggtcaagtttgaagctggggagtcc
cgtgtgggggttgtgcagtacagccatgacaacacgcaggagctggtggccatgggggat
gccaacatcgacaacatcggagcgctcaagcaggcagtcaagaacctgcagtggatcgct
gggggcacctacactggggaggccctgcagttcaccaaggacaacctgctgcggaggttc
acatccgacaagcgcgtggccatcgtcatcacagatgggcgctccgacaccctgcgggac
cccaccccgctcaactccctgtgcgatgtcaccccggtggtttcccttgggatcggtgac
attttccggaaccctccaaatccagatcacctgaatgacattgcttgtttaagcagacca
accaggccaggactgtccattcaaagggacaactatgccgagctcctggatgacaccttc
ttgcagaacatcacctcatatgtctgccaagagaaaaaatgtcctgactacacctgccca
atcaccttcaccgggccagcagacatcactctgctggtggacagctccaccagcgtgggg
agcaagaactttgagaccaccaagaagttcgtgaagcggctggcggggcggttcttggag
gccagcaagcccactgacgactctgtgcgcatctcggtggtgcagtacagcggccggaac
cagcagaaagtggaagctcagttcctgtacaactacacggtcattgccaaggccattgac
aacatggagttcatgaatgatgccacggacgtgaactctgctctgcagttcatcacagag
ctgtaccggcgctctgcccgcaccgcagccaagaagagggtgctggtgttttctgacgga
cactcccaagggatcactgccagggccattgagagggctgtgcaggacgcacagaaggct
gacattgagatctacgtgctggcagtgggaagccaagccaatgagcccaacatccgtgtc
ctggtcacggggaagagcgcagattacgatgtggcttatggggagcggcatcttttccgt
gtgcctgactacagctctctgctgcgtggtgtcttctaccaaactgtgtccaggaagata
gctgttgactga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (11)   

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