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KEGG   Nematolebias whitei (Rio pearlfish): 119419094
Entry
119419094         CDS       T08042                                 
Name
(RefSeq) collagen alpha-2(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
nwh  Nematolebias whitei (Rio pearlfish)
Pathway
nwh04510  Focal adhesion
nwh04512  ECM-receptor interaction
nwh04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:nwh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    119419094
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    119419094
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:nwh04147]
    119419094
   00536 Glycosaminoglycan binding proteins [BR:nwh00536]
    119419094
Exosome [BR:nwh04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   119419094
Glycosaminoglycan binding proteins [BR:nwh00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   119419094
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   119419094
SSDB
Motif
Pfam: VWA Collagen VWA_2
Other DBs
NCBI-GeneID: 119419094
NCBI-ProteinID: XP_037542320
Position
13:complement(18021490..18036446)
AA seq 1049 aa
MIGIHPTTTVLSGFIFLSLLRAAAAQGFGPRGPRPVPGRGDSPEPTPPPFPPEPTPRPKG
CEKLINCPIKVFFTIDTSETIALQESPPGSLVESIKEFTKIFTQKLADEEYRGQIQITWS
IGGLHFSQTQMVFSQFTTRESLIRSLSRIRYLGKGTYIDCALKNMTHQMTQHYYSGPKAV
LFSVVITDGHVTGNPCAGIKIMADKARDQGIQIFSVAASRSIDELGMSEIASSPTEMYRD
DYIVMEVVDGKPQLSTKSIDRIIKVMKYQAYLQCYKPTCLAVPGIPGRRGSSGPKGTKGE
RGKTGQKGEKGKQGDPGIEGPIGRPGLKGEIGFKGDKGERGFIGATGVAGAPGRNGTDGQ
KGKIGRIGAPGCKGNPGDKGPDGYPGEFGKSGPPGHQGEKGDPGLPGKPGPHGPQGERGP
KGENANPGNPGPPGEKGIQGPEGGPGPNGDLGRRGDPGVKGAKGPGGQKGVKGEQGPEGG
RGQPGEEGFKGAKGDQGLPGPRGQPGEPGPHGGNGTVGNLGEPGPRGDPGPPGPKGDKGR
SGFSYPGPRGSSGDVGDRGKRGPRGTRGECGAKGEPGEKGPRGEPGEPGQPGEPGERGPR
GEAGEDGGPGPVGDPGITDCDVMTYIRETCGCCDCEKHCGALDIVFVIDSSESVGLTNFT
LEKNFVINTINRLGSMASNPTSATGTRVGVVQFSHEGTFEAIRLDDPNINSMSAFKTAVK
NLQWIAGGTFTPSALKFAYDNLIRDSKRSRAKISVVVVTDGRFDPRDDDNKLRYLCNDPD
VVVNAIGVGDMFDKKHDSETLVSIACNNKNRITEMKQYTDLVAEDFIERMETVLCPDPVI
KCPDLPCQSELDVAPCVGRPVDLVFLLDGSERLGTENFNHVRNFVQAVTDKLVMAKGKSD
RKWARLALIEFGKENENQVAFPLTHDSKTIALGLSSLTYMDSSSTVGPAIIHTINDFLGK
GSTRKTRRGAEVSFVFVTDGVTNSSSLDEAVSAMRREQIVSTVIATGSDVDQEVLTKLAM
DDQEAIFKVQKFSDVLQSRMLNRFIRWVC
NT seq 3150 nt   +upstreamnt  +downstreamnt
atgattggtatccatccaaccacgactgtgttatcagggttcatctttctgtccctgctc
cgagctgcagcagctcagggatttgggcctcgtggacccagaccggtaccagggcggggg
gacagtccagaaccaactccacctccattcccaccagagcccacaccaagacctaaaggt
tgtgagaaactcatcaactgtcccatcaaggtgttcttcaccatcgacacctcagagacc
atcgctctgcaggagtccccgcctggcagcctggtggaaagcatcaaggagttcacaaaa
atcttcacccaaaagctcgcggacgaggaatacaggggccaaatccagatcacttggtcc
atcggaggcttgcacttctcccaaacacagatggttttcagccagttcacgaccagagag
agcttaatccggagtctcagtcggatcaggtacctgggcaaaggcacctacatcgactgt
gccctcaaaaacatgacccaccagatgactcagcactactattcagggccaaaggccgtc
ctcttctccgtggtcatcacggacggccatgtgaccggaaacccgtgtgctgggatcaaa
attatggcggacaaagctcgagatcagggcattcagatcttctcagtggcagcgtccagg
agcatcgatgagctggggatgagcgagatcgccagctcccccacagagatgtatcgtgat
gactacatcgtcatggaggtcgttgatgggaaaccacaactgagcaccaaatccattgat
aggatcatcaaagtcatgaaatatcaagcctacttacagtgttataagcctacatgtttg
gctgttcctgggatcccagggcgaagggggtcttcaggtccaaaaggcacaaaaggagaa
agaggtaagactgggcaaaaaggagaaaaaggtaaacagggtgatcctgggatcgaaggt
cccattggacgacccggattaaagggagaaattggatttaagggtgacaagggggaacgt
ggattcattggagcaacgggtgtcgccggagcgcctggcaggaatggaaccgatggacaa
aagggtaaaataggccgaattggagctcctggttgcaaagggaatccaggcgataaaggg
ccagatgggtacccaggagagtttggcaagtctggacccccaggtcaccaaggagaaaag
ggggatccgggactccctggaaagccgggcccccatggccctcagggtgagcgaggacct
aagggtgagaatgcaaatcctggaaatccagggccaccaggagaaaagggaattcaggga
cctgaaggtggacctggacccaacggcgacctgggcaggagaggagatcctggagtaaaa
ggggcaaaaggacctggtgggcaaaaaggagtaaaaggagaacaaggaccagaaggaggc
cgtggtcagcctggggaagaaggatttaagggagcgaagggagaccaaggcctaccagga
ccgaggggtcagccaggagaaccagggccgcatggaggaaatggcactgtgggaaatcta
ggagaacctggaccaagaggagatcctggtccaccaggtccaaagggcgataaaggcaga
tcaggattcagctatccaggaccgcgaggatcctctggagatgtaggggatcgaggtaag
agagggcccagaggaaccagaggagaatgtggcgcgaaaggagagcctggagagaaagga
cctcgaggagaaccgggagaaccaggccagccaggggagccgggggagcgaggaccccgg
ggagaagctggagaggatgggggtccaggaccggtcggcgatcctgggatcactgactgt
gacgtcatgacgtacatcagggaaacgtgcggttgttgtgactgtgaaaagcactgtgga
gccctggacattgtgtttgtgatcgatagctcagaaagtgtcgggctgaccaacttcacc
ctggaaaagaactttgtcatcaacaccatcaacagactgggatctatggcctccaacccg
acatcggcaactggcacacgagttggagttgtacagttcagtcacgaagggacctttgag
gctattcgccttgacgaccccaacataaactccatgtctgcctttaaaacagcagtgaag
aacctgcagtggatcgcagggggaaccttcacaccctctgctctcaaatttgcctatgac
aacctgattagggacagcaagagatcccgcgccaagatatctgtcgtcgtggtcaccgac
ggccgctttgaccctcgtgacgacgacaacaagctcaggtacctttgcaacgaccccgac
gtggtggtgaatgccattggggttggtgacatgtttgataagaaacatgatagtgagacc
cttgtgtcaatagcttgcaacaataagaacagaatcaccgagatgaagcaatacaccgac
ttggtggctgaggacttcattgagaggatggagactgtgctctgtcctgatccagtgatt
aaatgtccagacctcccctgtcaaagtgagctagacgtagctccgtgtgttggacgacct
gtagatctggtatttcttctagatggctccgagcgtctcggaacggagaacttcaaccac
gtccgtaactttgtgcaggctgtgacagacaaactggtaatggcgaaggggaagagcgat
cgaaagtgggctcgtctggcgctgatagagtttggcaaagaaaatgaaaatcaagtggct
ttccctctcacgcatgattctaagaccatcgctctgggtctatcaagtttaacctacatg
gattcttcttcaacggtggggcctgccatcatccacaccatcaatgacttcctgggtaaa
ggaagcactcgcaagacgaggcgtggagctgaggtgtcgtttgttttcgtcacggacgga
gtcactaacagcagcagcctggacgaggcggtcagtgcgatgcgcagggaacagattgtt
tccacagtgattgccacaggaagtgacgttgatcaagaagtcctaacaaaactagcaatg
gacgatcaggaagccattttcaaagtacaaaaattctctgacgtgttacaatctaggatg
ttaaaccgtttcatccggtgggtgtgttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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