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KEGG   Mus musculus (house mouse): 12833
Entry
12833             CDS       T01002                                 
Symbol
Col6a1, Col6a-1
Name
(RefSeq) collagen, type VI, alpha 1
  KO
K06238  collagen type VI alpha
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04151  PI3K-Akt signaling pathway
mmu04510  Focal adhesion
mmu04512  ECM-receptor interaction
mmu04820  Cytoskeleton in muscle cells
mmu04974  Protein digestion and absorption
mmu05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    12833 (Col6a1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    12833 (Col6a1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    12833 (Col6a1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    12833 (Col6a1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    12833 (Col6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mmu04147]
    12833 (Col6a1)
   00536 Glycosaminoglycan binding proteins [BR:mmu00536]
    12833 (Col6a1)
Exosome [BR:mmu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   12833 (Col6a1)
Glycosaminoglycan binding proteins [BR:mmu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   12833 (Col6a1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   12833 (Col6a1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 YcaO
Other DBs
NCBI-GeneID: 12833
NCBI-ProteinID: NP_034063
MGI: 88459
Ensembl: ENSMUSG00000001119
UniProt: Q04857 B0LAD9
Position
10:complement(76544626..76561869)
AA seq 1025 aa
MRLAHALLPLLLQACWVATQDIQGSKAIAFQDCPVDLFFVLDTSESVALRLKPYGALVDK
VKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPSGRDELKASVDAVK
YFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAKH
LGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGHSRDAEEVISQTIDTIVDMIKN
NVEQVCCSFECQAARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGMK
GEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGETGYPGLPGCKGSPGFDGIQGPPGPK
GDAGAFGMKGEKGEAGADGEAGRPGNSGSPGDEGDPGEPGPPGEKGEAGDEGNAGPDGAP
GERGGPGERGPRGTPGVRGPRGDPGEAGPQGDQGREGPVGIPGDSGEAGPIGPKGYRGDE
GPPGPEGLRGAPGPVGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGNRGPPGLNGTKG
YPGLKGDEGEVGDPGEDNNDISPRGVKGAKGYRGPEGPQGPPGHVGPPGPDECEILDIIM
KMCSCCECTCGPIDILFVLDSSESIGLQNFEIAKDFIIKVIDRLSKDELVKFEPGQSHAG
VVQYSHNQMQEHVDMRSPNVRNAQDFKEAVKKLQWMAGGTFTGEALQYTRDRLLPPTQNN
RIALVITDGRSDTQRDTTPLSVLCGADIQVVSVGIKDVFGFVAGSDQLNVISCQGLSQGR
PGISLVKENYAELLDDGFLKNITAQICIDKKCPDYTCPITFSSPADITILLDSSASVGSH
NFETTKVFAKRLAERFLSAGRADPSQDVRVAVVQYSGQGQQQPGRAALQFLQNYTVLASS
VDSMDFINDATDVNDALSYVTRFYREASSGATKKRVLLFSDGNSQGATAEAIEKAVQEAQ
RAGIEIFVVVVGPQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPNYQALLRGVLYQTVSR
KVALG
NT seq 3078 nt   +upstreamnt  +downstreamnt
atgaggctggcccacgctctgctgcccctgctgctacaagcctgctgggtggccacacag
gacatccagggctccaaagcgattgccttccaagactgccctgtggatctattcttcgtg
ctcgacacctcggagagtgtggccttgaggctgaaaccttatggggccttggtggacaag
gtgaagtccttcactaagcgcttcattgacaacctgagagacaggtactaccggtgtgac
cgcaacctggtttggaatgcgggtgcgctgcactacagtgacgaggtggagatcatccga
gggctcacgcgcatgcccagtggccgcgatgagctcaaggccagcgtggatgcggtcaag
tacttcgggaaaggcacctacaccgactgcgccattaagaaggggctggaggagctgctc
atagggggctcccacctgaaggagaacaagtacttgatcgtggtgaccgacgggcatcct
ctagagggctacaaggaaccatgcgggggtctggaagatgcagtaaatgaggccaaacac
ctgggcatcaaggtcttttctgtggccatcacacctgaccacctggagccacgtctaagt
atcattgccacagaccacacataccggcgcaatttcacggcagctgactgggggcatagc
cgcgatgcagaagaggtcatcagccagaccattgacaccattgtggacatgattaaaaat
aacgtggaacaagtgtgttgttcttttgagtgccaggctgccagaggacctccagggccc
cgaggcgaccctgggtatgagggggagcgaggaaagccaggtcttccgggagagaaggga
gaagctggagaccctggacgacctggggatcttggaccagtcgggtaccagggtatgaag
ggagaaaaggggagccgtggagagaagggttccagaggaccgaaaggttacaagggcgag
aaaggcaagcgcggaatcgacggggtcgacggcatgaagggagagacggggtacccagga
ctaccgggctgcaagggctccccaggatttgatggcattcaaggacccccgggtcccaag
ggtgatgctggtgcctttgggatgaagggagaaaagggtgaagctggagcagacggtgag
gctgggagaccagggaactcagggtcacctggagatgagggtgatcctggagagcctggt
ccccccggagaaaaaggagaggccggtgatgaaggaaatgctggcccagacggtgcccct
ggagagaggggtggccctggtgaaagaggacctcgggggacccctggtgtgagaggacca
aggggagacccgggtgaagctggaccacagggtgaccaaggaagagaggggcccgtcggc
atccctggagactcgggtgaggctggccccattggacctaaaggataccgaggtgatgag
ggtcctccaggtcctgagggcctcagaggagccccaggacctgttggtcctcctggagac
cccggactgatgggtgagagaggtgaggatggaccaccaggaaacggcacggaaggtttc
cccggcttccctgggtatccaggcaacagaggccctcctgggctaaatggcacaaaaggc
taccctggcctcaagggggatgagggtgaagtgggagacccaggagaggataacaacgac
atttcaccccgtggggtcaaaggggcaaagggataccgaggcccagaaggaccccaggga
cctccaggacatgtgggaccacctgggccagatgagtgtgagatcctggatatcatcatg
aaaatgtgctcctgctgtgagtgcacatgtggacccattgacatcctcttcgtgctggac
agctcggagagcattggcctacagaactttgagattgccaaggacttcatcatcaaggtc
attgaccggttgagcaaggatgagctggtcaaatttgagccagggcagtctcacgcgggc
gtggtacagtacagccacaaccagatgcaagagcacgtggacatgcggagccccaacgtc
cgcaacgcccaggacttcaaagaagctgtcaagaagctacaatggatggctggtggcaca
ttcaccggagaagcgctgcagtacacccgggaccggctactcccacccacacagaacaac
cgaattgccctggtcattacggatggacgttctgacactcaacgggacacgacacctctc
agtgtgctctgtggtgcagacattcaggtagtttctgtgggaatcaaggatgtgtttggc
tttgtggcgggctccgaccagctcaatgtcatttcctgccaaggcttatcgcaaggtcgg
ccaggtatctccctggtgaaggagaactatgcagagcttctcgatgacggctttctgaag
aacataacagcccagatctgtatagataagaagtgtccggattatacctgtccaatcaca
ttctcctccccggctgacatcaccatcctgctagacagctcagccagtgtcggcagccac
aacttcgaaaccaccaaggtcttcgccaagcgcctagctgagcgattcctgtcagcaggc
agggcggatccttcccaggatgtgcgggtggccgtggtacagtatagtggccaggggcag
caacagccaggtcgggcggctcttcagttcttacagaattacacagtgctggccagctct
gtggacagcatggatttcatcaacgacgccacagacgtcaacgatgctctgagctacgtg
actcgtttctaccgggaagcctcgtcaggtgccaccaagaagagagtgctgttgttttca
gacggcaactctcagggggccacagcagaggccattgagaaggctgtgcaggaggcccag
cgtgcaggcattgagatctttgtggtggtggtgggaccccaggtgaacgagccccacatc
cgtgtgcttgtcactggcaagactgcagagtacgacgtggcctttggcgagcgccaccta
ttccgtgtaccaaactaccaggccctgctacgtggcgtactctaccagacagtctccagg
aaggtggcactgggctag

  All links  
Gene (25)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (19)   
   RefSeq(nuc) (1)   
   GenBank (9)   
   EMBL (9)   
Protein domain (5)   
   Pfam (5)   
All databases (53)   

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