EBSeq

This is the released version of EBSeq; for the devel version, see EBSeq.

An R package for gene and isoform differential expression analysis of RNA-seq data

Bioconductor version: Release (3.20)

Differential Expression analysis at both gene and isoform level using RNA-seq data

Author: Xiuyu Ma [cre, aut], Ning Leng [aut], Christina Kendziorski [ctb], Michael A. Newton [ctb]

Maintainer: Xiuyu Ma <watsonforfun at gmail.com>

Citation (from within R, enter citation("EBSeq")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSeq")

biocViews	DifferentialExpression, ImmunoOncology, MultipleComparison, RNASeq, Sequencing, Software, StatisticalMethod
Version	2.4.0
In Bioconductor since	BioC 2.13 (R-3.0) (11 years)
License	Artistic-2.0
Depends	blockmodeling, gplots, testthat, R (>= 3.0.0)
Imports	Rcpp (>= 0.12.11), RcppEigen (>= 0.3.2.9.0)
System Requirements	c++11
URL

Suggests
Linking To	Rcpp, RcppEigen, BH
Enhances
Depends On Me	Oscope
Imports Me	BatchQC, broadSeq, DEsubs, scDD
Suggests Me	compcodeR
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	EBSeq_2.4.0.tar.gz
Windows Binary (x86_64)	EBSeq_2.4.0.zip (64-bit only)
macOS Binary (x86_64)	EBSeq_2.4.0.tgz
macOS Binary (arm64)	EBSeq_2.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EBSeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EBSeq
Bioc Package Browser	https://code.bioconductor.org/browse/EBSeq/
Package Short Url	https://bioconductor.org/packages/EBSeq/
Package Downloads Report	Download Stats