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vwa8 von Willebrand factor A domain containing 8 [ Sebastes umbrosus (honeycomb rockfish) ]

Gene ID: 119500113, updated on 21-Mar-2024

Summary

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Gene symbol
vwa8
Gene description
von Willebrand factor A domain containing 8
See related
EnsemblRapid:ENSSUBG00005010208
Gene type
protein coding
RefSeq status
MODEL
Organism
Sebastes umbrosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Scorpaenoidei; Sebastidae; Sebastinae; Sebastes
Orthologs
human zebrafish all
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Genomic context

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See vwa8 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
45
Annotation release Status Assembly Chr Location
100 current fSebUmb1.pri (GCF_015220745.1) 13 NC_051281.1 (5149336..5224467, complement)

Chromosome 13 - NC_051281.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119500735 Neighboring gene coagulation factor V Neighboring gene regulator of cell cycle Neighboring gene diacylglycerol kinase, eta Neighboring gene A kinase (PRKA) anchor protein 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051281.1 Chromosome 13 Reference fSebUmb1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
von Willebrand factor A domain-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sebastes umbrosus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSebUmb1.pri

Genomic

  1. NC_051281.1 Reference fSebUmb1.pri

    Range
    5149336..5224467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037789610.1 → XP_037645538.1  von Willebrand factor A domain-containing protein 8

    Related
    ENSSUBP00005038900.1, ENSSUBT00005029053.1
    Conserved Domains (3) summary
    COG5271
    Location:155 → 862
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam07728
    Location:96 → 252
    AAA_5; AAA domain (dynein-related subfamily)
    cl00057
    Location:1711 → 1900
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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