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VWA8 von Willebrand factor A domain containing 8 [ Petromyzon marinus (sea lamprey) ]

Gene ID: 116945846, updated on 1-Aug-2024

Summary

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Gene symbol
VWA8
Gene description
von Willebrand factor A domain containing 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Petromyzon marinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
Orthologs
human mouse all
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Genomic context

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See VWA8 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
33
Annotation release Status Assembly Chr Location
100 current kPetMar1.pri (GCF_010993605.1) 2 NC_046070.1 (9531907..9573024, complement)

Chromosome 2 - NC_046070.1Genomic Context describing neighboring genes Neighboring gene C-type mannose receptor 2-like Neighboring gene uncharacterized LOC116945860 Neighboring gene von Willebrand factor A domain-containing protein 8-like Neighboring gene NACHT, LRR and PYD domains-containing protein 3-like Neighboring gene MOS proto-oncogene, serine/threonine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046070.1 Chromosome 2 Reference kPetMar1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
von Willebrand factor A domain-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Petromyzon marinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference kPetMar1.pri Primary Assembly

Genomic

  1. NC_046070.1 Reference kPetMar1.pri Primary Assembly

    Range
    9531907..9573024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032960454.1 → XP_032816345.1  von Willebrand factor A domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0AAJ7TG67
    Conserved Domains (3) summary
    COG5271
    Location:393 → 811
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam07728
    Location:85 → 241
    AAA_5; AAA domain (dynein-related subfamily)
    cl38936
    Location:425 → 560
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_032960461.1 → XP_032816352.1  von Willebrand factor A domain-containing protein 8 isoform X2

    UniProtKB/TrEMBL
    A0AAJ7X0A5, S4RJF1
    Conserved Domains (3) summary
    COG5271
    Location:393 → 811
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam07728
    Location:85 → 241
    AAA_5; AAA domain (dynein-related subfamily)
    cl38936
    Location:425 → 560
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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