[go: up one dir, main page]
More Web Proxy on the site http://driver.im/

Warning: The NCBI web site requires JavaScript to function. more...

U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

VWA8 von Willebrand factor A domain containing 8 [ Physeter macrocephalus (sperm whale) ]

Gene ID: 102990129, updated on 30-Nov-2024

Summary

Go to the top of the page Help
Gene symbol
VWA8
Gene description
von Willebrand factor A domain containing 8
See related
Ensembl:ENSPCTG00005005091
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter macrocephalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See VWA8 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
47
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 13 NC_041226.1 (25602908..25968219)
102 previous assembly ASM283717v2 (GCF_002837175.2) 13 NC_041226.1 (25602908..25968128)

Chromosome 13 - NC_041226.1Genomic Context describing neighboring genes Neighboring gene A-kinase anchoring protein 11 Neighboring gene uncharacterized LOC129392677 Neighboring gene diacylglycerol kinase eta Neighboring gene regulator of cell cycle Neighboring gene N-alpha-acetyltransferase 16, NatA auxiliary subunit

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
von Willebrand factor A domain-containing protein 8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041226.1 Reference ASM283717v5 Primary Assembly

    Range
    25602908..25968219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028497346.2 → XP_028353147.1  von Willebrand factor A domain-containing protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A455BWK9
    Conserved Domains (3) summary
    COG5271
    Location:415 → 826
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam07728
    Location:105 → 261
    AAA_5; AAA domain (dynein-related subfamily)
    cl00057
    Location:1713 → 1853
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_024125806.3 → XP_023981574.1  von Willebrand factor A domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9T0E1
    Related
    ENSPCTP00005007251.1, ENSPCTT00005007975.1
    Conserved Domains (4) summary
    pfam07728
    Location:105 → 261
    AAA_5; AAA domain (dynein-related subfamily)
    cl00057
    Location:1713 → 1902
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl21455
    Location:442 → 585
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl26761
    Location:415 → 826
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  3. XM_055089369.1 → XP_054945344.1  von Willebrand factor A domain-containing protein 8 isoform X3

    UniProtKB/TrEMBL
    A0A9W2X1M1
    Related
    ENSPCTP00005007346.1, ENSPCTT00005008076.1

  4. XM_028497347.2 → XP_028353148.1  von Willebrand factor A domain-containing protein 8 isoform X4

    UniProtKB/TrEMBL
    A0A455BZD9
    Conserved Domains (3) summary
    COG5271
    Location:319 → 730
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam07728
    Location:9 → 165
    AAA_5; AAA domain (dynein-related subfamily)
    cl00057
    Location:1617 → 1806
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

RNA

  1. XR_003682537.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.