ProteoWizard provides a set of open-source, cross-platform software libraries and tools (e.g. msconvert, Skyline, IDPicker, SeeMS) that facilitate proteomics data analysis. The libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard chemistry and LCMS dataset computations.
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Modular design, for testability and extensibility
Framework for rapid development of data analysis tools
Open source license suitable for both academic and commercial projects (Apache v2)
Support for reading directly from many vendor raw data formats (on Windows)