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Monte Carlo simulation experiments for analysis of HIV vaccine effects and vaccine trial design

Published: 10 December 2000 Publication History

Abstract

The field of infectious disease epidemiology has increasingly adopted stochastic simulation technologies to simulate complex infectious disease transmission systems. Such simulations have both increased the scientific understanding of infectious disease transmission dynamics and served as important tools for evaluating epidemiologic study designs and statistical methods. This paper reports on a discrete-event simulation to analyze the recently developed Retrospective Partner Trials (RPT) HIV vaccine trial design. A specially designed simulation system, HIVSIM, was used to simulate data resulting from the RPT design vaccine trials. HIVSIM explicitly models complex HIV transmission dynamics (e.g., sexual partner mixing patterns and concurrent sexual partnerships) and vaccine trial design characteristics. Monte Carlo simulation analyses conducted with HIVSIM indicate that the RPT design is able to produce vaccine effect estimates with acceptably small bias, high precision and excellent statistical power under plausible HIV vaccine trial conditions. Additionally, the explicit simulation of HIV transmission dynamics permits investigations into the common, but unwarranted, statistical independence assumptions routinely used in the estimation of vaccine effects.

References

[1]
Ackerman, E., Elveback, L. R., and J. P. Fox. 1984. Simulation of infectious Disease Epidemics. Springfield, Illinois: C. C. Thomas.
[2]
Adams, A. L., Barth-Jones, D. C., Chick, S. E., and J. S. Koopman. 1998. Simulations to evaluate HIV vaccine trial designs. Simulation 71(4):228-241.
[3]
Anderson, R. M., and R. M. May. 1991. Infectious Diseases of Humans: Dynamics and Control. Oxford: Oxford University Press.
[4]
Balter M. 1999. AIDS now world's fourth biggest killer. Science. 284:1101.
[5]
Barth-Jones, D. C., Adams, A., Lange, K., Chick, S., and J. S. Koopman. 1998. Retrospective partner trials HIV vaccine study design for measurement of vaccine effects. Proceedings of the12th World AIDS Conference, Prevention and Epidemiology, Geneva, Switzerland,; Bolonga, Italy: Monduzzi Editore. pp. 285-289.
[6]
Barth-Jones, D. C. 1999. The Retrospective partner trials (RPT) HIV vaccine study design for the measurement of vaccine effects on susceptibility and infectiousness. Ph.D. Thesis, Epidemiologic Science, University of Michigan, Ann Arbor, Michigan.
[7]
Becker, N. G. 1989. Analysis of infectious disease data. London: Chapman and Hall.
[8]
Blackwelder, W. C. 1993. Sample size and power for prospective analysis of relative risk. Statistics in Medicine 12:691-698.
[9]
Blower, S. M., and A. R. McLean. 1994. Prophylactic vaccines, risk behavior change, and the probability of eradicating HIV in San Francisco. Science 265(5177):1451-4.
[10]
Boily, M. C. and R. M. Anderson. 1996. Human immunodeficiency virus transmission and the role of other sexually transmitted diseases. Measures of association and study design. Sexually Transmitted Diseases 23(4):312-332.
[11]
Chick, S. E., Adams, A. L., and J. S. Koopman. 2000. Analysis and simulation of a stochastic, discrete-individual model of STD transmission with partnership concurrency. Mathematical Biosciences 166:45-68.
[12]
Chick, S. E., Barth-Jones, D. C., and J. S. Koopman. In Press. Bias reduction for risk ratio and vaccine effect estimators. Statistics in Medicine.
[13]
Collett, D. 1994. Modelling Binary Data. London: Chapman and Hall.
[14]
Datta, S., Halloran, M. E., and I. M. Longini, Jr. 1998. Augmented HIV vaccine trial design for estimating reduction in infectiousness and protective efficacy. Statistics in Medicine 17:185-200.
[15]
Desai, K. N., Boily, M. C., Masse, B. R., Alary, M., and R. M. Anderson. 1999. Simulation studies of phase III clinical trials to test the efficacy of a candidate HIV-1 vaccine. Epidemiology and Infection. 123:65-88.
[16]
Donnelly P. 1993. The correlation structure of epidemic models. Mathematical Biosciences 117:49-75.
[17]
Efron, B., and R. J. Tibshirani. 1993. An Introduction to the Bootstrap. New York: Chapman and Hall.
[18]
Fox, J. P., Elveback, L., Scott, W., Gatewood, L., and E. Ackerman. 1971. Herd Immunity: basic concept and relevance to public health immunization practices. American Journal of Epidemiology. 94(3):179-189.
[19]
Francis, D. P., Gregory, T., McElrath, M. J., Belshe, R. B., Gorse, G. J., Migasena, S., Kitayaporn, D., Pitisuttitham, P., Matthews, T., and D. H. Schwartz. 1998. Advancing AIDSVAX to phase 3. Safety, immunogenicity, and plans for phase 3. AIDS Research and Human Retroviruses. 14(Suppl 3):S325-331.
[20]
Ghani, A. C., Donnelly, C. A., and G. P. Garnett. 1998. Sampling biases and missing data in explorations of sexual partner networks for the spread of sexually transmitted diseases. Statistics in Medicine. 17:2079-2097.
[21]
Good, P. 1994. Permutation Tests. New York: Springer-Verlag.
[22]
Haber, M., Longini, I. M. Jr., and M. E. Halloran. 1991. Measures of the effects of vaccination in a randomly mixing population. International Journal of Epidemiology 20(1):300-10.
[23]
Helander, M. E., and R. Batta. 1994. A discrete transmission model for HIV. In Kaplan, E. H., and M. I. Brandeu. Eds. Modeling the AIDS epidemic: Planning, policy and prediction. New York: Raven Press; pp. 585-611.
[24]
Isham, V., and G. Medley. 1996. Models for Infectious Human Diseases: Their Structure and Relation to Data. Cambridge: Cambridge University Press.
[25]
Jacquez, J. A. 1996. Compartmental Analysis in Biology and Medicine. 3rd ed., Biomedware, Ann Arbor, Michigan.
[26]
Jewell, N. P. 1986. On the bias of commonly used measures of association for 2 x 2 tables. Biometrics 42:351-358.
[27]
Leitner, T., Escanilla, D., Franzen, C., Uhlen, M., and J. Albert. 1996. Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis. Proceedings of the National Academy of Sciences USA 93:10864-10869.
[28]
Longini, I. M. Jr., Datta, S., and M. E. Halloran. 1996. Measuring vaccine efficacy for both susceptibility to infection and reduction in infectiousness for prophylactic HIV-1 vaccines. Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology 13(5):440-447.
[29]
Longini, I. M. Jr., Hudgens M. G., Halloran, M. E., and K. A. Sagatelian 1999. Markov model for measuring vaccine efficacy for both susceptibility to infection and reduction in infectiousness for prophylactic HIV-1 vaccines. Statistics in Medicine. 18:53-68.
[30]
Mollison, D. 1995. Epidemic Models: Their Structure and Relation to Data. Cambridge: Cambridge University Press.
[31]
Mooney, C. Z. 1997. Monte Carlo Simulation. #116: Quantitative Applications in the Social Sciences: Thousand Oaks, CA: Sage Publications.
[32]
O'Neill, R. T. 1988. On sample sizes to estimate the predictive efficacy of a vaccine. Statistics in Medicine 7:1279-1288.
[33]
Rice, J. A. 1995. Mathematical Statistics and Data Analysis. Belmont, California: Duxbury Press.
[34]
Rida, W. N. 1996. Assessing the effect of HIV vaccination on infectiousness. Statistics in Medicine 15(21-22):2393-404; discussion 2405-2412.
  1. Monte Carlo simulation experiments for analysis of HIV vaccine effects and vaccine trial design

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    cover image ACM Conferences
    WSC '00: Proceedings of the 32nd conference on Winter simulation
    December 2000
    2014 pages

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    • IIE: Institute of Industrial Engineers
    • ASA: American Statistical Association
    • SIGSIM: ACM Special Interest Group on Simulation and Modeling
    • IEEE/CS: Institute of Electrical and Electronics Engineers/Computer Society
    • NIST: National Institute of Standards and Technology
    • INFORMS-CS: Institute for Operations Research and the Management Sciences-College on Simulation
    • IEEE/SMCS: Institute of Electrical and Electronics Engineers/Systems, Man, and Cybernetics Society
    • SCS: The Society for Computer Simulation International

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    Society for Computer Simulation International

    San Diego, CA, United States

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    Published: 10 December 2000

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    Sponsor:
    • IIE
    • ASA
    • SIGSIM
    • IEEE/CS
    • NIST
    • INFORMS-CS
    • IEEE/SMCS
    • SCS
    WSC00: Winter Simulation Conference
    December 10 - 13, 2000
    Florida, Orlando

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