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Citation: Yi et al., doi:10.1093/nar/gkaa351 2020

Type:

Archaea

Bacteria

Virus/Provirus

Search for:

MGE

Prophage

Nucleotide sequence file (Fasta format)

Use prodigal to generate .faa and .gff file.

.faa file

.gff file

Aca E-Value

Aca Identity (%)

Aca coverage (frac)

Maximum amino acid length of protein (aa)

Maximum intergenic distance between genes (bp)

Operon up/down-stream range for MGE/prophage search (no. of genes)

OR

If you click Run An EXAMPLE (Example Genome is a Bacteria Genome: GCF_000210795.2), please choose Type Bacteria.

Type:

Archaea

Bacteria

Virus/Provirus

Paste a nucleotide sequence (FASTA format) below.

Aca E-Value

Aca Identity (%)

Aca coverage (frac)

Maximum amino acid length of protein (aa)

Maximum intergenic distance between genes (bp)

Operon up/down-stream range for MGE/prophage search (no. of genes)

OR

If you click Paste an Example (Example Genome is a Virus Genome: GCF_000857285.1), please choose Type Virus.