TCGA Wanderer: An interactive viewer to explore DNA methylation and gene expression data in human cancer

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Wanderer
An interactive viewer to explore DNA methylation
and gene expression data in human cancer

Gene Symbol or Ensembl Gene Id

Examples: BRCA1 or ENSG00000141510 Important: Press refresh after entering a new gene name

Dataset

Data Type:

We offer level 3 TCGA data for methylation arrays (450k Infinium chip) and expression (Illumina HiSeq RNAseq, summarized by exons and genes).

Plotting parameters

Distribute uniformly ?

Show gene location ?

Highlight CpG islands ?

Boxplot all the data ?

Specify a region

Adjusted p-value threshold:

Correlation method:

Fit linear regression

Download Data & Results

If you consider this software useful please cite our paper Wanderer, an interactive viewer to explore DNA methylation and gene expression data in human cancer at Epigenetics and Chromatin 2015, 8:22. Data have been obtained from the TCGA Research Network. Some datasets have limitations for usage until a global analysis is published; please contact TCGA before publishing.

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